View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0889_low_6 (Length: 431)

Name: NF0889_low_6
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0889_low_6
NF0889_low_6
[»] chr1 (3 HSPs)
chr1 (30-418)||(6831711-6832099)
chr1 (256-404)||(26403936-26404084)
chr1 (238-368)||(49213355-49213485)
[»] chr4 (4 HSPs)
chr4 (98-418)||(28393996-28394316)
chr4 (256-404)||(1544303-1544451)
chr4 (30-96)||(28394463-28394529)
chr4 (238-368)||(25431513-25431643)
[»] chr8 (7 HSPs)
chr8 (98-418)||(32528209-32528529)
chr8 (98-371)||(26344461-26344734)
chr8 (30-96)||(32528676-32528742)
chr8 (30-91)||(26344886-26344947)
chr8 (325-381)||(32851444-32851500)
chr8 (325-381)||(37174587-37174643)
chr8 (259-383)||(43444555-43444679)
[»] scaffold0438 (1 HSPs)
scaffold0438 (221-371)||(14622-14772)
[»] chr2 (2 HSPs)
chr2 (130-305)||(43372845-43373022)
chr2 (357-418)||(43372768-43372829)
[»] chr6 (3 HSPs)
chr6 (256-404)||(7037007-7037155)
chr6 (311-383)||(26257005-26257077)
chr6 (325-381)||(20737934-20737990)
[»] chr5 (1 HSPs)
chr5 (256-404)||(17796425-17796573)
[»] chr7 (3 HSPs)
chr7 (259-383)||(8988982-8989106)
chr7 (259-383)||(43585867-43585991)
chr7 (256-404)||(30506893-30507042)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 6831711 - 6832099
Alignment:
Q  30 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtcacattcaaaatatcaggccgtgtggctatcaga 129  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||| |||| | |||||    
T  6831711 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaattgctgtcgcattcaaaatatcaggccgcgtggttgtcaga 6831810  T
Q  130 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattggagtgctca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  6831811 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgccaagcttctcctttgaattcattggagtgctca 6831910  T
Q  230 tttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattcc 329  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6831911 tttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatggaaatttcatccttgatttgcttgatttccattcc 6832010  T
Q  330 aagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 418  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6832011 aagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 6832099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 26404084 - 26403936
Alignment:
Q  256 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 354  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  26404084 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 26403986  T
Q  355 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 404  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  26403985 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 26403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 49213485 - 49213355
Alignment:
Q  238 cattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagt 337  Q
    ||||| ||||| | ||| ||||||||||| || ||||| ||||| || |||||||| ||||| |||| |||  ||||  |||||||||| || | ||| |    
T  49213485 cattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatctcattcttcttttgagtgatttccatgcccaaaaaat 49213386  T
Q  338 aagtcactaatccaagatctgtcatctcaaa 368  Q
    ||||||  |  |||||||| |||||||||||    
T  49213385 aagtcataagaccaagatcagtcatctcaaa 49213355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 98 - 418
Target Start/End: Complemental strand, 28394316 - 28393996
Alignment:
Q  98 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 197  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394316 cattcaaaatatcaggccgcgttgctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 28394217  T
Q  198 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394216 aagtttctcctttgaattcattggagtgctcatttatctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 28394117  T
Q  298 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 397  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394116 atttcatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 28394017  T
Q  398 caatcaatgcaacattatttc 418  Q
    |||||||||||||||||||||    
T  28394016 caatcaatgcaacattatttc 28393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 1544451 - 1544303
Alignment:
Q  256 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 354  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  1544451 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 1544353  T
Q  355 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 404  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  1544352 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 1544303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28394529 - 28394463
Alignment:
Q  30 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc 96  Q
    |||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  28394529 aacctagtgagaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc 28394463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 25431643 - 25431513
Alignment:
Q  238 cattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagt 337  Q
    ||||| ||||| | ||| ||||||||||| || ||||| ||||| || |||||||| ||||| |||| |||  ||||  |||||||||| || | ||| |    
T  25431643 cattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatctcattcttcttttgagtgatttccatgcccaaaaaat 25431544  T
Q  338 aagtcactaatccaagatctgtcatctcaaa 368  Q
    ||||||  |  |||||||| |||||||||||    
T  25431543 aagtcataagaccaagatcagtcatctcaaa 25431513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 98 - 418
Target Start/End: Complemental strand, 32528529 - 32528209
Alignment:
Q  98 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 197  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528529 cattcaaaatatcaggccgcatggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 32528430  T
Q  198 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 297  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32528429 aagtttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcatttgacaaatgaaa 32528330  T
Q  298 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 397  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528329 attttatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 32528230  T
Q  398 caatcaatgcaacattatttc 418  Q
    ||||||||||| |||||||||    
T  32528229 caatcaatgcatcattatttc 32528209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 98 - 371
Target Start/End: Complemental strand, 26344734 - 26344461
Alignment:
Q  98 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 197  Q
    |||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26344734 cattcaaaatattaggccgcgtgggtgtcagatacatcaaacaaccgatcagacttctaaaatatgtttgatcaatcttttcagttccatcttctttgca 26344635  T
Q  198 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 297  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26344634 aagtttctcctttgaattcattggagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 26344535  T
Q  298 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattc 371  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26344534 atttcatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaaaatctgtcatctcaaattc 26344461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 32528742 - 32528676
Alignment:
Q  30 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc 96  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  32528742 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc 32528676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 26344947 - 26344886
Alignment:
Q  30 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcg 91  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||    
T  26344947 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctcctcaatcg 26344886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 32851444 - 32851500
Alignment:
Q  325 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 381  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |||||||||    
T  32851444 attccaagaaagtatttcattaatccaagatctgtcatctcatattctttcatcatt 32851500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 37174587 - 37174643
Alignment:
Q  325 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 381  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |||||||||    
T  37174587 attccaagaaagtatttcattaatccaagatctgtcatctcatattctttcatcatt 37174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 43444679 - 43444555
Alignment:
Q  259 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 358  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  43444679 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 43444580  T
Q  359 tcatctcaaattccttcatcatttc 383  Q
    |||| |||||  ||| |||||||||    
T  43444579 tcatttcaaaagcctacatcatttc 43444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 221 - 371
Target Start/End: Complemental strand, 14772 - 14622
Alignment:
Q  221 gagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgat 320  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14772 gagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgctttgcttgat 14673  T
Q  321 ttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattc 371  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  14672 ttccattccaagaaagtaagtcattaatccaaaatctgtcatctcaaattc 14622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 130 - 305
Target Start/End: Complemental strand, 43373022 - 43372845
Alignment:
Q  130 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatctttt--cagttccatcttctttgcaaagtttctcctttgaattcattggagtgct 227  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||| |||||||||||||||||| |    
T  43373022 tacatcaaacaaccaattagacttctaaaatacgcttgatcaatcttttttcagtttcatcttctttgcgaagtttctcttttgaattcattggagtggt 43372923  T
Q  228 catttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatc 305  Q
    |||||   | |||||||| ||||||||||| || |  ||||||||||| ||||| || |||||| | |||| ||||||    
T  43372922 catttcattgcattcttcgagtttaaacttcttaatgatttcttttgcatattttttctgacaacttaaaacttcatc 43372845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 43372829 - 43372768
Alignment:
Q  357 tgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 418  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||    
T  43372829 tgtcatctcaaattctttcattatttccaacttaaattcatcaatcaaggctgcattatttc 43372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 7037155 - 7037007
Alignment:
Q  256 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 354  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  |||||| ||  ||||||    
T  7037155 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcattagcccaaga 7037057  T
Q  355 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 404  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  7037056 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 7037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 26257077 - 26257005
Alignment:
Q  311 tttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttc 383  Q
    ||||||||||||| || ||||||||||||||||  |  |||||||||||||| |||||  |||||||||||||    
T  26257077 tttgcttgatttcaataccaagaaagtaagtcataagaccaagatctgtcatttcaaaagccttcatcatttc 26257005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 20737934 - 20737990
Alignment:
Q  325 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 381  Q
    ||||||||||||||  ||| |||||||| ||||||||||||| |||| |||||||||    
T  20737934 attccaagaaagtatttcattaatccaacatctgtcatctcatattctttcatcatt 20737990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 17796573 - 17796425
Alignment:
Q  256 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 354  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  17796573 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 17796475  T
Q  355 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 404  Q
    ||||||||||||||| | ||  |||||||||  || |||| |||||||||    
T  17796474 tctgtcatctcaaatacttttgtcatttccatcttgaatttatcaatcaa 17796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 8989106 - 8988982
Alignment:
Q  259 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 358  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  8989106 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 8989007  T
Q  359 tcatctcaaattccttcatcatttc 383  Q
    |||| |||||  |||||||||||||    
T  8989006 tcatttcaaaagccttcatcatttc 8988982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 43585991 - 43585867
Alignment:
Q  259 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 358  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  43585991 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 43585892  T
Q  359 tcatctcaaattccttcatcatttc 383  Q
    |||| |||||  |||||||||||||    
T  43585891 tcatttcaaaagccttcatcatttc 43585867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 404
Target Start/End: Original strand, 30506893 - 30507042
Alignment:
Q  256 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaa-gtcactaatccaag 353  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||| | |||||  || |||| ||  || ||    
T  30506893 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccatttcgagaaaaaaaagtcattagccccag 30506991  T
Q  354 atctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 404  Q
    |||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  30506992 atctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 30507042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 750 times since January 2019
Visitors: 6705