View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_low_8 (Length: 425)
Name: NF0889_low_8
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 165 - 336
Target Start/End: Complemental strand, 50792061 - 50791891
Alignment:
| Q |
165 |
tagtaaaaattcatgtagaggtgagcagagtgatgtgttgggggacatgttatatttgtccctaacttgattctaaattttaatcgcaccgtttattagg |
264 |
Q |
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| T |
50792061 |
tagtaaaaattcatgtagaggtgagcagagtgatgtgttgggggacaagtaatatttgtccctaacttgattctaaattttaatcgcaccg-ttattagg |
50791963 |
T |
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| Q |
265 |
tccctaatccatctctagattggaaaaaattcaacggtctacgagtcaaatagatctaaggcatgatgatgt |
336 |
Q |
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| T |
50791962 |
ttcctaatccatctctagattgaaaaaaattcaacggtctatgagtcaaatagatctaaggcatgatgatgt |
50791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 50792247 - 50792081
Alignment:
| Q |
1 |
atatagctttaccaacttccatgcaggtgtaaattaagactagagattaggtgtccgaacttgaactttattggtctattcatatgcttgtcacagggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50792247 |
atatagctttaccaacttccatgcaggtgtaaattaagactagatattaggtgtccgaacttgaactttattggtctattcatatgcttgtcacaggttg |
50792148 |
T |
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| Q |
101 |
ttgactatttaaaggaatcctacannnnnnnnnnnagtaggtcagagtaaaaattccatggtaatagta |
169 |
Q |
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| T |
50792147 |
ttgactatttaaaggaatcctaca--tttttttttagtaggtcagagtaaaaattccatggtaatagta |
50792081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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