View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_high_1 (Length: 454)
Name: NF0890_high_1
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 5024420 - 5024873
Alignment:
| Q |
1 |
tgatgactcgaggaacttttgaggattgcatcaattttgaagttctcatcctattacttctatccactgaatgaaagggaggactaataggatctttgac |
100 |
Q |
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| T |
5024420 |
tgatgactcgaggaacttttgaggattgcatcaattttgaagttctcatcctattacttctatccactgaatgaaagggaggactaataggatctttgac |
5024519 |
T |
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| Q |
101 |
atgtttgattgctggactgccttttgttgcttgcctgccaagcttgacaactgacattccatcagtaggatcactgcggtaaaccttgttacttgatgat |
200 |
Q |
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| T |
5024520 |
atgtttgattgctggactgccttttgttgcttgcctgccaagcttgacaactgacattccatcagtaggatcactgcggtaaaccttgttacctgatgat |
5024619 |
T |
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| Q |
201 |
ttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactaccctgagttg |
300 |
Q |
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| T |
5024620 |
ttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactaccctgagttg |
5024719 |
T |
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| Q |
301 |
aactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactattactcgtattgtc |
400 |
Q |
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| T |
5024720 |
aactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactattactcgtattgtc |
5024819 |
T |
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| Q |
401 |
atacggagaatttgaagcctgatcacttgcagtatctaatgattctttgtatct |
454 |
Q |
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| T |
5024820 |
atacggagaatttgaagtctgatcacttgcagtatctaatgattctttgtatct |
5024873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 4559078 - 4559172
Alignment:
| Q |
198 |
gatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactacc |
292 |
Q |
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|||||| || ||||||||| ||||| |||| || |||||| | |||||| | || |||||||||||| ||||||||||||| |||||||||| |
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| T |
4559078 |
gatttatcaggaattggcagttctgtagaaggaggattattggcttttctagtcacttttgttggtttcgtgatgacaattggtaatttactacc |
4559172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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