View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0890_low_1 (Length: 515)

Name: NF0890_low_1
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0890_low_1
NF0890_low_1
[»] chr4 (4 HSPs)
chr4 (70-303)||(10364360-10364593)
chr4 (301-421)||(10364163-10364283)
chr4 (468-503)||(10364081-10364116)
chr4 (192-255)||(25323853-25323916)
[»] chr8 (2 HSPs)
chr8 (196-255)||(44931237-44931296)
chr8 (197-255)||(38476248-38476306)
[»] chr2 (2 HSPs)
chr2 (191-249)||(41112892-41112950)
chr2 (70-102)||(19141947-19141979)
[»] chr1 (2 HSPs)
chr1 (192-242)||(48114372-48114422)
chr1 (191-255)||(11524755-11524819)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 70 - 303
Target Start/End: Complemental strand, 10364593 - 10364360
Alignment:
Q  70 tccttattagtggactaccattgtggatgctcttaacaaacctatcacgcctgggattgaacatctagagttgcaccaatcttggataagctatacatca 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10364593 tccttattagtggactaccattgtggatgctcttaacaaacctatcacgcctaggattgaacatctagagtggcaccaatcttggataagctatagatca 10364494  T
Q  170 tattaaaatttaggttggaccatgttaaagagtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatccacaatgcttcagat 269  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10364493 tattaaaatttgggttggaccatgttaaagagtcccacatcagttgacagacgacatgaataagtgtttataagtgggggcaatccacagtgcttcagat 10364394  T
Q  270 agtatcagtgcctattccaaaatccgttgggtca 303  Q
    |||||||||| |||||||||||||||||||||||    
T  10364393 agtatcagtggctattccaaaatccgttgggtca 10364360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 10364283 - 10364163
Alignment:
Q  301 tcaacatgtagtataaagataaggattacttacagtggaggtggcattgttgttatgatgatgttgcagcacagaaacagacctcatcctaatagaagac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10364283 tcaacatgtagtataaagataaggattacttacagtggaggtggcattgttgttatgatgatgttgcagcacagaaacagacctcatcctaatagaagac 10364184  T
Q  401 caatcaacccttcttggtctc 421  Q
    |||||||||||||||||||||    
T  10364183 caatcaacccttcttggtctc 10364163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 10364116 - 10364081
Alignment:
Q  468 ttggtacagagaatataaaagctctatacagcttca 503  Q
    ||||||||||||||||||||||||||||||||||||    
T  10364116 ttggtacagagaatataaaagctctatacagcttca 10364081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 25323916 - 25323853
Alignment:
Q  192 tgttaaagagtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc 255  Q
    |||||||||| |||||||| ||||| ||| ||| |||| |||| |||||| |||||||||||||    
T  25323916 tgttaaagagccccacatcggttgagagatgacctgaacaagtgtttatacgtgggggcaatcc 25323853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 44931296 - 44931237
Alignment:
Q  196 aaagagtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc 255  Q
    ||||||||||||||| ||||| ||| | | ||||||||| ||||||||||||||||||||    
T  44931296 aaagagtcccacatcggttgagagatggcctgaataagtgtttataagtgggggcaatcc 44931237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 38476248 - 38476306
Alignment:
Q  197 aagagtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc 255  Q
    |||||||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||    
T  38476248 aagagtcccacatcagttgagagatggcctgaataagtgtttataagtgggggaaatcc 38476306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 41112892 - 41112950
Alignment:
Q  191 atgttaaagagtcccacatcagttgacagacgacatgaataagtatttataagtggggg 249  Q
    ||||||||  ||| |||||| ||||| ||| |||||||||||||||||| |||||||||    
T  41112892 atgttaaaatgtctcacatcggttgagagatgacatgaataagtatttaaaagtggggg 41112950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 19141947 - 19141979
Alignment:
Q  70 tccttattagtggactaccattgtggatgctct 102  Q
    ||||||||| |||||||||||||||||||||||    
T  19141947 tccttattaatggactaccattgtggatgctct 19141979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 48114372 - 48114422
Alignment:
Q  192 tgttaaagagtcccacatcagttgacagacgacatgaataagtatttataa 242  Q
    ||||| |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  48114372 tgttagagagtctcacatcggttgagagatgacatgaataagtatttataa 48114422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 11524755 - 11524819
Alignment:
Q  191 atgttaaagagtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc 255  Q
    ||||||||||||||||  || ||||| | | ||| ||||||||| |||||||||| |||||||||    
T  11524755 atgttaaagagtcccatgtcggttgagaaatgacctgaataagtgtttataagtgcgggcaatcc 11524819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University