View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0890_low_13 (Length: 251)
Name: NF0890_low_13
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15874332 - 15874086
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15874332 |
aaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
15874233 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
15874232 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaatgcccgaatgccctaaaccttaa |
15874133 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagatgctatattgttggaga |
247 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| || |||||||||||| |
|
|
| T |
15874132 |
gtttgaccaactgatgcacatatggagagatactttattgttggaga |
15874086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 15899737 - 15899983
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15899737 |
aaagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgaggatgcaattgaaggctaca |
15899836 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
15899837 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaa |
15899936 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagatgctatattgttggaga |
247 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| || | |||||||||| |
|
|
| T |
15899937 |
gtttgaccaactgatgcacatatggagagatacttttttgttggaga |
15899983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15920765 - 15920995
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15920765 |
aaagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaattgaaggctaca |
15920864 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
15920865 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaa |
15920964 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagat |
231 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| |
|
|
| T |
15920965 |
gtttgaccaactgatgcacatatggagagat |
15920995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 14060746 - 14060516
Alignment:
| Q |
2 |
aagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaa |
101 |
Q |
| |
|
|||||| |||| ||||||| || ||||||||||| | ||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| | ||| |
|
|
| T |
14060746 |
aagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattcaa |
14060647 |
T |
|
| Q |
102 |
tgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaag |
201 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||||||| ||| |||||||| || |||| |||||| |||||||| | || || | |||||||||||| |
|
|
| T |
14060646 |
tgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaag |
14060547 |
T |
|
| Q |
202 |
tttgaccgacttatgtacatatggagagatg |
232 |
Q |
| |
|
||||||| | | ||||| ||||||||||||| |
|
|
| T |
14060546 |
tttgaccaattgatgtatatatggagagatg |
14060516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 14049352 - 14049130
Alignment:
| Q |
25 |
cttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggaaat |
124 |
Q |
| |
|
||||||||||| | ||||||||||||||||| | | ||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||| || |
|
|
| T |
14049352 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatat |
14049253 |
T |
|
| Q |
125 |
tgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaagtttgaccgacttatgtacatatg |
224 |
Q |
| |
|
|||| |||||||||| ||| ||||| || ||||||| |||||| |||||||| | || || | ||||||||||||||||| | | | ||||||||||| |
|
|
| T |
14049252 |
tgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatcaattgatgtacatatg |
14049153 |
T |
|
| Q |
225 |
gagagatgctatattgttggaga |
247 |
Q |
| |
|
|||||||| || |||||||||| |
|
|
| T |
14049152 |
gagagatgttaagttgttggaga |
14049130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 427 times since January 2019
Visitors: 6714