View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_low_3 (Length: 431)
Name: NF0890_low_3
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 56 - 425
Target Start/End: Complemental strand, 39515614 - 39515252
Alignment:
| Q |
56 |
gggggagatgcctgttaagaatatgaggatgttttaaaaataacgaaagagaatttccattttcttttgaaagaaaaagtgaatttcctattattattat |
155 |
Q |
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| T |
39515614 |
gggggagatgtctgttaagaatatgaggatgttttaaaaataacgaaagagaatttccattttcttttgaaagaaaaagtgaatttcctattattatttt |
39515515 |
T |
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| Q |
156 |
tttaaggaagaatttcttggttagtatacaaatcacagtcaaaatatttaatacaactcaaaataataaaataatcgatttcatgtgtagctaccaaata |
255 |
Q |
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| T |
39515514 |
tttaaggaagaatttcttggttagtatacaaatca--gtcaaaatatttaatacaactcaaaataataa-----tcgatttcatgtgtagctaccaaata |
39515422 |
T |
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| Q |
256 |
acgcttaaaaatgaataaagtttaattggcaatctgcacgttttaaattactaacaaaacatgggtgcatttttacaggtgttttcttcaataaactacg |
355 |
Q |
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| T |
39515421 |
acgcttaaaaatgaataaagtttaattggcaatctgcacgttttaaattactaacaaaacatgggtgcgtttttacaggtgttttcttcaataaactacg |
39515322 |
T |
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| Q |
356 |
aaaaatacctaaagaaataaatgcaagttttgtcctctattatatacactcttgagatgagaataatcta |
425 |
Q |
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| T |
39515321 |
aaaaatacctaaagaaataaatgcaagttttgtcctctattatatacactcttgagatgagaataatcta |
39515252 |
T |
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