View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_low_4 (Length: 423)
Name: NF0890_low_4
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 15874332 - 15873918
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874332 |
aaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
15874233 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||| |
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| T |
15874232 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaatgcccgaatgccctaaaccttaa |
15874133 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagatgctatattgctggagaaccaacttccaaacaa-aatgcttgagattctatgcgaagaaacaggtattga |
299 |
Q |
| |
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|||||||| ||| ||| |||||||||||||| || ||||| ||||||| |||||||| || || |||||||||||||||||||||||||| |||||||| |
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| T |
15874132 |
gtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcccaagaataatgcttgagattctatgcgaagaaatgggtattga |
15874033 |
T |
|
| Q |
300 |
tttggtttatttatctaacaattatggtgatatgggtagaggcaaacgacttggaatggtaatggtccaattgg---atgctaagccctttcatatactt |
396 |
Q |
| |
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||||| | |||| |||||||| | |||||||||| | ||||||||||||||||||||| ||| |||||| || |||||||||||||||||||| |
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| T |
15874032 |
tttggaatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaaatcctaagccctttcatatactt |
15873933 |
T |
|
| Q |
397 |
gattttactcgttca |
411 |
Q |
| |
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|||||| |||||||| |
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| T |
15873932 |
gattttgctcgttca |
15873918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 15899737 - 15900150
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
15899737 |
aaagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgaggatgcaattgaaggctaca |
15899836 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
15899837 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaa |
15899936 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagatgctatattgctggagaaccaacttccaaacaaaatgcttgagattctatgcgaagaaacaggtattgat |
300 |
Q |
| |
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|||||||| ||| ||| |||||||||||||| || | ||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| || ||||| |
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| T |
15899937 |
gtttgaccaactgatgcacatatggagagatacttttttgttggagaatcaacttccaaaaataatgcttgagattctatgcgaagaaacgagtgttgat |
15900036 |
T |
|
| Q |
301 |
ttggtttatttatctaacaattatggtgatatgggtagaggcaaacgacttggaatggtaatggtccaattgga---tgctaagccctttcatatacttg |
397 |
Q |
| |
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|||| || |||| |||||||| | || |||||| | |||||||||||||||||| |||| |||||||||| | ||||||||||||| |||||| |
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| T |
15900037 |
ttggattttttaattaacaattcttttgcaatgggtgcatgcaaacgacttggaatggcaatgctccaattggaaaatcataagccctttcatttacttg |
15900136 |
T |
|
| Q |
398 |
attttactcgttca |
411 |
Q |
| |
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||||| ||||||| |
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| T |
15900137 |
attttggtcgttca |
15900150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 15920765 - 15921179
Alignment:
| Q |
1 |
aaagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctaca |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15920765 |
aaagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaattgaaggctaca |
15920864 |
T |
|
| Q |
101 |
atgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
15920865 |
atgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaa |
15920964 |
T |
|
| Q |
201 |
gtttgaccgacttatgtacatatggagagatgctatattgctggagaaccaacttccaaacaaaatgcttgagattctatgcgaagaaacaggtattgat |
300 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| ||| ||| | |||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||| |
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| T |
15920965 |
gtttgaccaactgatgcacatatggagagatactaatttgttagagaaccagcttccaaacaaaatgcttgagattctatgcaaagaagcgggttatgat |
15921064 |
T |
|
| Q |
301 |
ttggtttatttatctaacaattatggtgatatgggtagaggcaaacgacttggaatggtaatggtccaattgg---atgctaagccctttcatatacttg |
397 |
Q |
| |
|
|||| | |||| ||||||||||| | || ||||| |||| |||||| |||||||||||||| ||||||| || ||||||||| |||| |||| | |
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|
| T |
15921065 |
ttgggatttttaattaacaattatgataatttgggtcgaggtaaacgatgcggaatggtaatggttcaattggaaaatactaagccctgtcatctactcg |
15921164 |
T |
|
| Q |
398 |
attttactcgttcat |
412 |
Q |
| |
|
||||| ||||||||| |
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| T |
15921165 |
attttgctcgttcat |
15921179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 14060746 - 14060445
Alignment:
| Q |
2 |
aagatgataacgaagcatgtaagcttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaa |
101 |
Q |
| |
|
|||||| |||| ||||||| || ||||||||||| | ||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| | ||| |
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|
| T |
14060746 |
aagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattcaa |
14060647 |
T |
|
| Q |
102 |
tgataatgatcttgcttggaaattgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaag |
201 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||||||| ||| |||||||| || |||| |||||| |||||||| | || || | |||||||||||| |
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|
| T |
14060646 |
tgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaag |
14060547 |
T |
|
| Q |
202 |
tttgaccgacttatgtacatatggagagatgctatattgctggagaaccaacttccaaacaaaatgcttgagattctatgcgaagaaacaggtattgatt |
301 |
Q |
| |
|
||||||| | | ||||| ||||||||||||| | ||| | ||||||||||||||| || |||||||||||||| ||||| | |||| ||| ||||||| |
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|
| T |
14060546 |
tttgaccaattgatgtatatatggagagatgtttcgttgttagagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgatt |
14060447 |
T |
|
| Q |
302 |
tg |
303 |
Q |
| |
|
|| |
|
|
| T |
14060446 |
tg |
14060445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 14049352 - 14049074
Alignment:
| Q |
25 |
cttttgcttaaaatgattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggaaat |
124 |
Q |
| |
|
||||||||||| | ||||||||||||||||| | | ||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||| || |
|
|
| T |
14049352 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatat |
14049253 |
T |
|
| Q |
125 |
tgtttgtggatggattttctttgctacactttatggcaaatgttgatgaccacaacccggatgccctaaatcttaagtttgaccgacttatgtacatatg |
224 |
Q |
| |
|
|||| |||||||||| ||| ||||| || ||||||| |||||| |||||||| | || || | ||||||||||||||||| | | | ||||||||||| |
|
|
| T |
14049252 |
tgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatcaattgatgtacatatg |
14049153 |
T |
|
| Q |
225 |
gagagatgctatattgctggagaaccaacttccaaacaaaatgcttgagattctatgcgaagaaacaggtattgatttg |
303 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| || |||||||||||||| ||||| | | || ||| ||||||||| |
|
|
| T |
14049152 |
gagagatgttaagttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgcaagaggcattgatttg |
14049074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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