View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_low_5 (Length: 387)
Name: NF0890_low_5
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 38498268 - 38498459
Alignment:
| Q |
18 |
tctacctagaagctaaattttgagctttgattctaaaattgatttccagactcaannnnnnngttcaactcacttttatatattcaaatataaatcactt |
117 |
Q |
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| T |
38498268 |
tctacctagaagctaaattttgagctttgattctaaaattgattaccagactcaatttttttgttcaactcacttttatatattcaaatataaatcactt |
38498367 |
T |
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| Q |
118 |
tactttcaactctcgtttcggccagaatcaagtttacaaaatcatataattccaaatcaatttttctcactgtagaatcaaacacacaccgg |
209 |
Q |
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| T |
38498368 |
tactttcaactctcgtttcggccagaatcaagtttacaaaatcatataattccaaatcaatttttctcactgtagaatcaaacacacaccgg |
38498459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 38498543 - 38498617
Alignment:
| Q |
293 |
caggtgattacttgagatcgcgtgcatcaacaccggagttcttattggagtagggacctttggaagtgatgatgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38498543 |
caggtgattacttgagatcgcgtgcatcaacaccggagttcttattggagtagggacctttggaagtgatgatgt |
38498617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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