View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_low_6 (Length: 345)
Name: NF0890_low_6
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 345
Target Start/End: Original strand, 5014155 - 5014421
Alignment:
| Q |
90 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacaccatta------ |
183 |
Q |
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| T |
5014155 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacaccattaaatacc |
5014254 |
T |
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| Q |
184 |
----gacactcacggttatacacaaatcaaaccctaagtgnnnnnnnatgaaaaatgtcaacat-atattattgtttggtacaataaactacaataaata |
278 |
Q |
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| T |
5014255 |
attagacactcacggttatacacaaatcaaaccctaagtgtttttttatgaaaaatgtcaacattatattattgtttggtacaataaactacaataaata |
5014354 |
T |
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| Q |
279 |
atgttcaaagctaatcatcttcatattaccactttattttacacattttacatattaatcatatctt |
345 |
Q |
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| T |
5014355 |
atgttcaaagctaatcatcttcatattaccactttattttacacattttacatattaatcatatctt |
5014421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 345
Target Start/End: Original strand, 41779584 - 41779850
Alignment:
| Q |
90 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacaccatta------ |
183 |
Q |
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| T |
41779584 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacaccattaaaaacc |
41779683 |
T |
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| Q |
184 |
----gacactcacggttatacacaaatcaaaccctaagtgnnnnnnnatgaaaaatgtcaacat-atattattgtttggtacaataaactacaataaata |
278 |
Q |
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| T |
41779684 |
attagacactcacggttatacacaaatcaaaccctaagtgtttttttatgaaaaatgtcaacattatattattgtttggtacaataaactacaataaata |
41779783 |
T |
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| Q |
279 |
atgttcaaagctaatcatcttcatattaccactttattttacacattttacatattaatcatatctt |
345 |
Q |
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| T |
41779784 |
atgttcaaagctaatcatcttcatattaccactttattttacacattttacatattaatcatatctt |
41779850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 35299276 - 35299035
Alignment:
| Q |
90 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacacc---------- |
179 |
Q |
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| T |
35299276 |
catcatcatcagtagcaatgaaatgtccaccatgatgcaaaatcaaagttgcctttgcttccatctgatcaaaacataaccataaacaccattaaacacc |
35299177 |
T |
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| Q |
180 |
attagacactcacggttatacacaaatcaaaccctaagtgnnnnnnnatgaaaaatgtcaaca-tatattattgtttggtacaataaactacaataaata |
278 |
Q |
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| T |
35299176 |
attagacactcacggttatacacaaatcaaaccctaagtg-ttttttatgaaaaatgtcaagattatataattgttttgtacaataaactacaataaata |
35299078 |
T |
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| Q |
279 |
atgttcaaagctaatcatcttcatattaccactttattttaca |
321 |
Q |
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| T |
35299077 |
atgttcaaagctaatcatcttcatattaccactttattttaca |
35299035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 33062091 - 33062023
Alignment:
| Q |
257 |
gtacaataaactacaataaataatgttcaaagctaatcatcttcatattaccactttattttacacatt |
325 |
Q |
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| T |
33062091 |
gtacaataaactacaataaataattttcaaagctaatcatcttcatattaacactttattttacacatt |
33062023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 22367821 - 22367746
Alignment:
| Q |
95 |
tcatcagtagcaatgaaatgtccaccatgatgc-aaaatcaaagttgcctttgcttccatctgatcaaaacataac |
169 |
Q |
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||||||| | |||||||||||| |||||||||| |||| ||| |||| ||||| ||||||||| ||||||||||| |
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| T |
22367821 |
tcatcagaaccaatgaaatgtctaccatgatgcaaaaaccaatgttgtctttggttccatctgtccaaaacataac |
22367746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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