View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0890_low_7 (Length: 336)
Name: NF0890_low_7
Description: NF0890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0890_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 72 - 332
Target Start/End: Original strand, 1586854 - 1587114
Alignment:
| Q |
72 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccgttcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586854 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
1586953 |
T |
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| Q |
172 |
tctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1586954 |
tctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatat |
1587053 |
T |
|
| Q |
272 |
cttccactcatattatagtaataaaccccactcccacaacacttctcattcttcatctcac |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |
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| T |
1587054 |
cttccactcatattatagtaataaaccccactcccacaactcctgtcattcttcatttcac |
1587114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 316
Target Start/End: Original strand, 17303585 - 17303829
Alignment:
| Q |
72 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccgttcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
171 |
Q |
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|||| ||||||||||||||||| | ||||||||||||||||| ||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
17303585 |
catcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatg |
17303684 |
T |
|
| Q |
172 |
tctcaatccatctctatacataccct-tatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcata |
270 |
Q |
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| T |
17303685 |
tctcaatccttgtcgata-ttgccctctataacgacttccccttgcccatgtctccacaccatacccatcatacctcccatcaatccaatccccttcata |
17303783 |
T |
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| Q |
271 |
tcttccactcatattatagtaataaaccccactcccacaacacttc |
316 |
Q |
| |
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| T |
17303784 |
cctcccactcatactataataataaacaccactccctgaacacttc |
17303829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 86 - 303
Target Start/End: Original strand, 24238852 - 24239069
Alignment:
| Q |
86 |
tgaacaccactaccatgactctgtccattcaaccgttcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctc |
185 |
Q |
| |
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||||||||| |||||||||||||||||| |||| ||| |||| |||| ||| |||||||||||||||||||||||| | |||| |||||| || | | |
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| T |
24238852 |
tgaacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgtt |
24238951 |
T |
|
| Q |
186 |
tatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttccactcatatt |
285 |
Q |
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|||| ||||||||| ||||||||| || ||| || |||| ||| |||| |||||||| |||||||||||||| ||||||||||||||||||| || |
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| T |
24238952 |
tataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacata |
24239051 |
T |
|
| Q |
286 |
atagtaataaaccccact |
303 |
Q |
| |
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||| | |||||| ||||| |
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| T |
24239052 |
ataatgataaactccact |
24239069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 277
Target Start/End: Original strand, 32693579 - 32693777
Alignment:
| Q |
79 |
acaagtatgaacaccactaccatgactctgtccattcaaccgttcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaat |
178 |
Q |
| |
|
|||||| |||| ||| |||||||||| || ||||| ||| |||||||| | || ||| |||||||| || |||||||||||| | |||| ||||| | |
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| T |
32693579 |
acaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcatt |
32693678 |
T |
|
| Q |
179 |
ccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttcca |
277 |
Q |
| |
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|| | ||||||| ||||||||| ||||| || || ||||||||||| ||| | || |||||| | |||||||||||||| ||||||||||||||| |
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|
| T |
32693679 |
ccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatcttcca |
32693777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 41090311 - 41090403
Alignment:
| Q |
224 |
tcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccactcccacaacacttc |
316 |
Q |
| |
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|||||||||||||| ||||| || ||||||| |||||| |||||| ||||||||||||||| | | | |||||| |||||||| |||||||| |
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| T |
41090311 |
tcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctgaacacttc |
41090403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 13145373 - 13145285
Alignment:
| Q |
102 |
gactctgtccattcaaccgttcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatac |
190 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||| | |||| |||||||||||||| |||||| || |||||| |||||||||||| |
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| T |
13145373 |
gactctgtctgttcaaccattcaccagcatagacaccctcagtgtaaaatctataaaccccaaacttatgtctcaagccatctctatac |
13145285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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