View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0891_low_1 (Length: 675)

Name: NF0891_low_1
Description: NF0891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0891_low_1
NF0891_low_1
[»] chr5 (14 HSPs)
chr5 (11-620)||(37195803-37196412)
chr5 (244-446)||(37226985-37227187)
chr5 (244-446)||(37221512-37221714)
chr5 (244-324)||(37207539-37207619)
chr5 (244-446)||(37201011-37201213)
chr5 (53-103)||(37440376-37440426)
chr5 (50-103)||(37221318-37221371)
chr5 (50-103)||(37226791-37226844)
chr5 (244-446)||(37386765-37386967)
chr5 (366-447)||(37440682-37440763)
chr5 (606-647)||(37196435-37196476)
chr5 (52-103)||(37387090-37387141)
chr5 (244-316)||(37309115-37309187)
chr5 (244-331)||(37440556-37440643)
[»] chr3 (1 HSPs)
chr3 (210-272)||(36193096-36193158)
[»] chr2 (1 HSPs)
chr2 (246-305)||(8739507-8739566)


Alignment Details
Target: chr5 (Bit Score: 598; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 11 - 620
Target Start/End: Original strand, 37195803 - 37196412
Alignment:
Q  11 cacagacacaataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttggccatata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37195803 cacagacacaataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttggccatata 37195902  T
Q  111 tttcaataccaagttgctacaaaagatacttatttatctgttgctagtaacaactattccaatttgactacttctgaatggttgcaaaatttcaatagct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37195903 tttcaataccaagttgctacaaaagatacttatttatctgttgctagtaacaattattccaatttgactacttctgaatggttgcaaaatttcaatagct 37196002  T
Q  211 atccatcaaatgatattcctgatactggaactcttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37196003 atccatcaaatgatattcctgatactggaactcttaatgttactgttaattgttcatgtgggaacagtgatgtttccaaggattatggtttgtttattac 37196102  T
Q  311 atatcctcttagacctgaggattctttggaattgatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196103 atatcctcttagacctgaggattctttggaattgatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagt 37196202  T
Q  411 caagggagtggtttggtttatattcctgggaaaggtactttcttatttttgcttctatatatgttttggtcttttgatatcaattcattatgtttttgta 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37196203 caagggagtggtttggtttatattcctgggaaaggtactttcttatttttgcttctatatatgttttggtcttttgatatcaattcatgatgtttttgta 37196302  T
Q  511 catactgtgagattgattttcttatagtatgtattaaattggttaaagggtaataggtatttgctattttacttttgatttttgtgaatttatatagaat 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196303 catactgtgagattgattttcttatagtatgtattaaattggttaaagggtaataggtatttgctattttacttttgatttttgtgaatttatatagaat 37196402  T
Q  611 catggttttt 620  Q
    ||||||||||    
T  37196403 catggttttt 37196412  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 37226985 - 37227187
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaatt 343  Q
    ||||||| |||||||||||||| ||||||||| | || ||||| || |||||||||||||| ||||||||||||||||||||||| ||  |||||||||     
T  37226985 ttaatgtcactgttaattgttcctgtgggaacggagaggtttcaaaagattatggtttgttcattacatatcctcttagacctgacgacactttggaatc 37227084  T
Q  344 gatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaa 443  Q
     ||| ||||  | ||  |  || | | |||||||||||| | ||| ||||||||||| ||||| || ||||| || ||| | ||||||||||| ||||||    
T  37227085 cattgctaagtataccaaggttaagggtgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaaggggtcttgtttatattccagggaaa 37227184  T
Q  444 ggt 446  Q
    |||    
T  37227185 ggt 37227187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 37221512 - 37221714
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaatt 343  Q
    |||||||||||||||| ||||| ||||||| ||| || ||||| ||||||||||||||||| || ||||| ||||||||  || ||||  ||||||| |     
T  37221512 ttaatgttactgttaactgttcctgtgggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtc 37221611  T
Q  344 gatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaa 443  Q
     ||||||||  | ||    ||||| |||||||||||||| | ||| ||||||||||| ||||| || ||||| |||||| | |||| |||||| ||||||    
T  37221612 tatttctaaggataccatgattgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaa 37221711  T
Q  444 ggt 446  Q
    |||    
T  37221712 ggt 37221714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 37207539 - 37207619
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagac 324  Q
    ||||||||||| |||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||    
T  37207539 ttaatgttactattaactgttcctgtgggaacagagaggtttccaaggattatggtttgttcatcacatatccacttagac 37207619  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 37201011 - 37201213
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaatt 343  Q
    |||| |||||||||||||||||||||||||| |  || ||||| | ||||||||| ||||| || |||||||| ||||||  ||||||  ||||||| |     
T  37201011 ttaaagttactgttaattgttcttgtgggaataaagaggtttctatggattatggattgttcatcacatatccacttagaagtgaggacactttggagtc 37201110  T
Q  344 gatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaa 443  Q
     ||| ||||     | || ||||| |||||||||||||| | ||| ||||||||||| ||||| ||  |||| |||||| | |||| |||||| ||||||    
T  37201111 tattgctaagggtgcagagattgaggctgagttgctgcagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaa 37201210  T
Q  444 ggt 446  Q
    |||    
T  37201211 ggt 37201213  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37440376 - 37440426
Alignment:
Q  53 aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 103  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37440376 aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttgg 37440426  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 37221318 - 37221371
Alignment:
Q  50 tacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 103  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37221318 tacaagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttgg 37221371  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 37226791 - 37226844
Alignment:
Q  50 tacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 103  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  37226791 tacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttgg 37226844  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 446
Target Start/End: Complemental strand, 37386967 - 37386765
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaatt 343  Q
    |||||||||||||||| ||||| |||||  |||     ||||||||||||||||||||||| || ||||||||||||||  |||||||  ||||||| |     
T  37386967 ttaatgttactgttaactgttcctgtggagacaaaatggtttccaaggattatggtttgttcataacatatcctcttagttctgaggacactttggagtc 37386868  T
Q  344 gatttctaataagactgaaattgatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaa 443  Q
     ||| | ||  | ||  || || |  |||||||||| || ||||| ||||||||||||||||| ||  |||| |||||  |||||| |||||| ||||||    
T  37386867 cattgcgaagcatacaaaagttaagcctgagttgctacagaagtacaaccctggtgtgaatttcagcaaaggaagtgggctggtttttattccagggaaa 37386768  T
Q  444 ggt 446  Q
    |||    
T  37386767 ggt 37386765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 37440682 - 37440763
Alignment:
Q  366 gatgctgagttgctgcaaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaaggta 447  Q
    ||||||||||||||||| | ||| ||||| ||||||||||| || ||||| |||||| |||||| |||||| ||||||||||    
T  37440682 gatgctgagttgctgcagaggtacaacccaggtgtgaatttcagccaaggaagtggtctggtttttattccagggaaaggta 37440763  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 647
Target Start/End: Original strand, 37196435 - 37196476
Alignment:
Q  606 agaatcatggtttttgaaaaggacaaaatttaagtgtatttt 647  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  37196435 agaatcatggtttttgaaaaggacaaaacttaagtgtatttt 37196476  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 37387141 - 37387090
Alignment:
Q  52 caagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 103  Q
    ||||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  37387141 caagactgaatgttccattcccttgtgattgcattaatgacgagtttcttgg 37387090  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 37309115 - 37309187
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcc 316  Q
    ||||||| ||||| ||||||||||||||||||||  |  |||| || |||||||| ||||||||||| |||||    
T  37309115 ttaatgtaactgtcaattgttcttgtgggaacagccagatttcaaaagattatggcttgtttattacctatcc 37309187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 37440556 - 37440643
Alignment:
Q  244 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgagga 331  Q
    |||||||||||||||| ||||| |||||  | ||    |||||||||||||||||||||||  | ||||||||||||||  |||||||    
T  37440556 ttaatgttactgttaactgttcctgtggagaaagactggtttccaaggattatggtttgttcgtaacatatcctcttagttctgagga 37440643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 36193096 - 36193158
Alignment:
Q  210 tatccatcaaatgatattcctgatactggaactcttaatgttactgttaattgttcttgtggg 272  Q
    |||||| | |||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  36193096 tatccaccgaatgatattcctgatactggaacgttgaatgttactgttaattgttcttgtggg 36193158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 8739566 - 8739507
Alignment:
Q  246 aatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgttt 305  Q
    ||||||||||| ||||||||||||||  | || |||||||| ||||||||||| ||||||    
T  8739566 aatgttactgtaaattgttcttgtggtgatagagatgtttcaaaggattatgggttgttt 8739507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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