View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0891_low_2 (Length: 404)
Name: NF0891_low_2
Description: NF0891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0891_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 16549668 - 16549287
Alignment:
| Q |
1 |
tgttttcattgtctctgcacttgagataatccatcttgaagtgattggtcttgtgacaactgaagcatttgtacttcaacttgccactaccaattgagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16549668 |
tgttttcattgtctctgcacttgagataatccatcttgaagtgattggtcttgtgacaattgaagcatttgtacttcaacttgccaccaccaattgagtt |
16549569 |
T |
|
| Q |
101 |
tagtcgatttcctctacttgtaccttttcttcttgagacattcaagcctttaccattatcatcaaactttaagccttggagttggttaacttcttggttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16549568 |
tagtcgatttcctctacttgtaccttttcttcttgagacattcaagcctttaccattatcatcaaactttaagccttggagttggttaacttcttggttc |
16549469 |
T |
|
| Q |
201 |
tttgtgnnnnnnnnnnacttcatccaaggtgatggtgagttctttagcataaagcatggtatccttccttaaagtgctcaaaggatctaggtattgcaca |
300 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16549468 |
tttgtg-tttttttttacttcatccagggtgatggtgagttctttagcataaagcatggtatccttccttaaagtgctcaaaggatctaggtattgcaca |
16549370 |
T |
|
| Q |
301 |
caaaaagtaaagtgttgtcttcatcctgaatgttcaccaaaccattaagaattttgttaaatttcgtcaattatttgatgatg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||| |
|
|
| T |
16549369 |
caaaaagtaaagtgttgtcttcatcctgaatgttcaccaaaccattaagaattttgttaaacttcatcaattgttttatgatg |
16549287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 10380161 - 10380316
Alignment:
| Q |
47 |
ggtcttgtgacaactgaagcatttgtacttcaacttgccactaccaattgagtttagtcgatttcctctacttgtaccttttcttcttgagacattcaag |
146 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||| ||| ||| |||||||| |||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
10380161 |
ggtcttgtgacactagaagcacttgtacttcgacttgtcaccaccctttgagtttccacgatttcctctactcc-accacttcctcttgagacattcaag |
10380259 |
T |
|
| Q |
147 |
cctttaccattatcatcaaactttaag-ccttggagttggttaacttcttggttctt |
202 |
Q |
| |
|
|||| || | ||||||||||||| ||| ||||| | ||| ||||||| ||||||||| |
|
|
| T |
10380260 |
ccttcacgagtatcatcaaacttcaagaccttgaacttgattaactttttggttctt |
10380316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 25446472 - 25446401
Alignment:
| Q |
132 |
cttgagacattcaagcctttaccattatcatcaaactttaa-gccttggagttggttaacttcttggttctt |
202 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| | ||| | ||||||||||| ||||||||| |
|
|
| T |
25446472 |
cttgagacattcaagccttctccactatcatcaaactttaactctttgaacttggttaactttttggttctt |
25446401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 32578085 - 32578012
Alignment:
| Q |
28 |
aatccatcttgaagtgattggtcttgtgacaactgaagcatttgtacttcaacttgccactaccaattgagttt |
101 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| |||||||| | |||||| ||||| ||| ||| |||||||| |
|
|
| T |
32578085 |
aatccctcttgaagtgactcgtcttgtgacaattgaagcatatatacttcgacttgtcaccaccctttgagttt |
32578012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 3307276 - 3307234
Alignment:
| Q |
34 |
tcttgaagtgattggtcttgtgacaactgaagcatttgtactt |
76 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
3307276 |
tcttgaagttattggtcttgtgacaattgaagcatttatactt |
3307234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 976 times since January 2019
Visitors: 6707