View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0891_low_4 (Length: 373)
Name: NF0891_low_4
Description: NF0891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0891_low_4 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 29041025 - 29041386
Alignment:
| Q |
1 |
tacaactctactttcactttggtggtagtttccaccgattgcactatcccattcggtgcaactttggtgaatctttggaacaattagatttgctacctca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041025 |
tacagctctactttcactttggtggtagtttccaccgattgcactatcccattcggtgcaactttggtgaatctttggaacaattagatttgctacctca |
29041124 |
T |
|
| Q |
101 |
cgttcaaatcaaattcttttgacctgattgtttctaccagatttatgttatgcctttcgactggcaggcagagttctccttgccggcagctataccatcc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
29041125 |
cgttcaaatcaaattctttcgacctgattgtttctaccggatttatgttatgcctttcgactggcaggtagtgttctccttgccggcagctataccatcc |
29041224 |
T |
|
| Q |
201 |
aaagctgcgctatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaaccgcgttcctttgctcaagctctggtggcatcgcaca |
300 |
Q |
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|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
29041225 |
aaagttgcaccatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaactgcgttcctttgctaaagctctggtggcatcgcaca |
29041324 |
T |
|
| Q |
301 |
gtaatgtctcaaacgtcattatgccgcagtcaactattcgtggtgatatactctccattcat |
362 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29041325 |
gtaatgtcataaacgtcattatgccgcagtcaactattcgtggtgatacactctccattcat |
29041386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 28976011 - 28975862
Alignment:
| Q |
149 |
tatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttca |
248 |
Q |
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|||||| ||||||| |||||||||||| | |||||||||||| | | ||||||||||| | |||||||||||| ||| | || || |||||||| || |
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| T |
28976011 |
tatgccgttcgactagcaggcagagttgttattgccggcagctgcatcctccaaagctgcaccatctcccatggcactgccgtccacaacggcggttcca |
28975912 |
T |
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| Q |
249 |
gcacctcaaccacaaccgcgttcctttgctcaagctctggtggcatcgca |
298 |
Q |
| |
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||||| ||||||| |||||| |||||||| ||||| || || |||||||| |
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| T |
28975911 |
gcaccacaaccaccaccgcggtcctttgcacaagcacttgttgcatcgca |
28975862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 20950233 - 20950573
Alignment:
| Q |
10 |
actttcactttggtggtagttt-ccaccgattgcactatcccattcggtgcaactttggtgaatctttggaacaattagatttgctacctcacgttcaaa |
108 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
20950233 |
actttcactttggtggtacttttccaccgattgcactaccctattcggtgca-----------tctttggaacaattagatttgttacctcactttcaaa |
20950321 |
T |
|
| Q |
109 |
tcaaattcttttgacctgattgtttctaccagatttatgttatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgc |
208 |
Q |
| |
|
||||| || || ||||||||||||| |||| ||||| || |||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| |
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| T |
20950322 |
tcaaactcattcgacctgattgtttataccggatttctgctatgcctttcgaatggcaggcagagctctccttgccagcagctacaccatccaaagctgc |
20950421 |
T |
|
| Q |
209 |
gctatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaaccgcgttcctttgctcaagctctggtggcatcgcacagtaatgtc |
308 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20950422 |
gcaatctcccatggctttgactccagcagcggcggtttcagcacctcaaccacagccgcgttcctttgctcaagctctggtggcatcgcacagtaatgtc |
20950521 |
T |
|
| Q |
309 |
tcaaacgtcattatgccgcagtcaactattcgtggtgatatactctccattc |
360 |
Q |
| |
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|||| ||||||||||| || ||| ||||||| |||||| ||||||||||| |
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| T |
20950522 |
acaaatgtcattatgccacatccaattattcgtagtgatacactctccattc |
20950573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 10304880 - 10304737
Alignment:
| Q |
156 |
ttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttcagcacctc |
255 |
Q |
| |
|
||||| |||||||||||||| | |||||| ||||| || ||||||||||| | ||||| |||||| ||| | || || |||||||| ||||||| | |
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| T |
10304880 |
ttcgattggcaggcagagttgttattgccgacagctgcgccctccaaagctgcaccatctctcatggcactgccctccacaacggcggttccagcaccac |
10304781 |
T |
|
| Q |
256 |
aaccacaaccgcgttcctttgctcaagctctggtggcatcgcac |
299 |
Q |
| |
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|||||| |||| |||||||| ||||| || || ||||||||| |
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| T |
10304780 |
aaccaccgtcgcggtcctttgcacaagcacttgtcgcatcgcac |
10304737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 149 - 360
Target Start/End: Complemental strand, 38501882 - 38501671
Alignment:
| Q |
149 |
tatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttca |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
38501882 |
tatgcctttcgactggcaggcagagctctctttgccggcagctacaccatccaaagcagcgccatctcccatggctctgacttcagcagcggcgatttca |
38501783 |
T |
|
| Q |
249 |
gcacctcaaccacaaccgcgttcctttgctcaagctctggtggcatcgcacagtaatgtctcaaacgtcattatgccgcagtcaactattcgtggtgata |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||| |
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| T |
38501782 |
gcacctcaaccacagccgcgttcctttgctcaagctttggtggcatcgcacagtaatgttacaaacgttattatgccgcagccaactatttgtggtgata |
38501683 |
T |
|
| Q |
349 |
tactctccattc |
360 |
Q |
| |
|
||||||||||| |
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|
| T |
38501682 |
cactctccattc |
38501671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 9282713 - 9282849
Alignment:
| Q |
165 |
caggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaac |
264 |
Q |
| |
|
||||||||||| | |||||| |||||| ||| ||||||| || || |||||||||||| ||| |||| |||| ||||| ||||||| ||||||| || |
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|
| T |
9282713 |
caggcagagttgttattgccgacagctacaccctccaaagttgtgccatctcccatggcactgtcttccacagctgcggtcccagcaccacaaccaccac |
9282812 |
T |
|
| Q |
265 |
cgcgttcctttgctcaagctctggtggcatcgcacag |
301 |
Q |
| |
|
|||| |||||||| ||||| || || ||||||||||| |
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|
| T |
9282813 |
cgcggtcctttgcacaagcacttgttgcatcgcacag |
9282849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 140 - 360
Target Start/End: Complemental strand, 5415 - 5198
Alignment:
| Q |
140 |
gatttatgttatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcg |
239 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| | |
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|
| T |
5415 |
gatttctgctatgcctttcgactggcaagcagagctctctttgccggcagctacaccatccaaagttgcgccatctcccatggctctgacttcagcagtg |
5316 |
T |
|
| Q |
240 |
gcggtttcagcacctcaaccacaaccgcgttcctttgctcaagctctggtggcatcgcacagtaatgtctcaaacgtcattatgccgcagtcaactattc |
339 |
Q |
| |
|
| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
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|
| T |
5315 |
gtggtt---gcacctcaaccacagtcgcgttcctttgctcaagctttggtggcatcgcacagtaatgttacaaacgttattatgccgcagccaactattc |
5219 |
T |
|
| Q |
340 |
gtggtgatatactctccattc |
360 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
5218 |
gtggtgatacactctccattc |
5198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 21493677 - 21493643
Alignment:
| Q |
270 |
tcctttgctcaagctctggtggcatcgcacagtaa |
304 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
21493677 |
tcctttgcacaagctctggtggcatcgcacagtaa |
21493643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 22835797 - 22835762
Alignment:
| Q |
29 |
tttccaccgattgcactatcccattcggtgcaacttt |
65 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22835797 |
tttccaccgattgcacta-cccattcggtgcaacttt |
22835762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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