View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0891_low_7 (Length: 286)

Name: NF0891_low_7
Description: NF0891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0891_low_7
NF0891_low_7
[»] chr8 (15 HSPs)
chr8 (57-202)||(477121-477261)
chr8 (57-113)||(5922048-5922104)
chr8 (57-113)||(11879599-11879655)
chr8 (57-113)||(11897015-11897071)
chr8 (57-113)||(31424162-31424218)
chr8 (68-111)||(9036758-9036801)
chr8 (57-112)||(17646993-17647048)
chr8 (61-110)||(15294672-15294721)
chr8 (61-110)||(15475041-15475090)
chr8 (68-113)||(23136348-23136393)
chr8 (61-114)||(24056646-24056699)
chr8 (65-113)||(15761521-15761569)
chr8 (58-112)||(45403029-45403083)
chr8 (68-113)||(27836549-27836594)
chr8 (57-113)||(22910276-22910332)
[»] chr4 (11 HSPs)
chr4 (57-114)||(5362037-5362094)
chr4 (57-113)||(8889227-8889283)
chr4 (57-112)||(8011290-8011345)
chr4 (61-112)||(4156763-4156814)
chr4 (61-112)||(9149813-9149864)
chr4 (57-113)||(13023566-13023623)
chr4 (61-113)||(13551700-13551752)
chr4 (68-111)||(7044728-7044771)
chr4 (61-108)||(7815561-7815608)
chr4 (68-113)||(8744087-8744132)
chr4 (61-113)||(24719516-24719568)
[»] chr1 (20 HSPs)
chr1 (57-114)||(25146842-25146899)
chr1 (58-105)||(16125533-16125580)
chr1 (61-110)||(19010024-19010073)
chr1 (57-113)||(9352137-9352193)
chr1 (57-113)||(9955109-9955165)
chr1 (57-112)||(23528656-23528711)
chr1 (57-112)||(30619075-30619130)
chr1 (59-113)||(9327291-9327345)
chr1 (57-111)||(42180139-42180193)
chr1 (57-113)||(18304885-18304941)
chr1 (61-113)||(21846346-21846398)
chr1 (57-113)||(34478844-34478900)
chr1 (57-112)||(13276340-13276395)
chr1 (57-112)||(14074444-14074499)
chr1 (57-110)||(12513283-12513336)
chr1 (68-113)||(17056084-17056129)
chr1 (68-113)||(47785791-47785836)
chr1 (57-113)||(41032744-41032800)
chr1 (57-112)||(12800655-12800710)
chr1 (61-109)||(12003241-12003289)
[»] chr6 (18 HSPs)
chr6 (57-113)||(6943534-6943590)
chr6 (57-112)||(15528184-15528239)
chr6 (57-113)||(7223518-7223574)
chr6 (57-114)||(30912486-30912543)
chr6 (57-113)||(10509097-10509153)
chr6 (61-113)||(17543818-17543870)
chr6 (57-113)||(27233351-27233407)
chr6 (61-112)||(7918459-7918510)
chr6 (68-113)||(17103201-17103246)
chr6 (57-112)||(17250057-17250112)
chr6 (57-112)||(26053370-26053425)
chr6 (57-112)||(26073423-26073478)
chr6 (68-113)||(5422833-5422878)
chr6 (57-114)||(23897809-23897866)
chr6 (62-113)||(10958266-10958317)
chr6 (59-109)||(2912323-2912373)
chr6 (68-113)||(18491122-18491167)
chr6 (61-105)||(8545043-8545087)
[»] chr7 (23 HSPs)
chr7 (57-112)||(44944923-44944978)
chr7 (61-112)||(5715290-5715341)
chr7 (57-112)||(22687738-22687793)
chr7 (57-114)||(7730417-7730473)
chr7 (57-113)||(8330119-8330175)
chr7 (57-113)||(26281383-26281439)
chr7 (57-112)||(4247356-4247411)
chr7 (57-112)||(11326386-11326441)
chr7 (61-112)||(21846503-21846554)
chr7 (57-111)||(5058530-5058584)
chr7 (58-112)||(24990146-24990200)
chr7 (57-113)||(24725551-24725607)
chr7 (57-113)||(27221417-27221473)
chr7 (62-114)||(39182258-39182310)
chr7 (65-112)||(30294175-30294222)
chr7 (57-110)||(8346607-8346660)
chr7 (57-113)||(8343874-8343930)
chr7 (61-113)||(9685322-9685374)
chr7 (61-113)||(21157852-21157904)
chr7 (61-113)||(26565706-26565758)
chr7 (61-113)||(26617554-26617606)
chr7 (57-103)||(11324988-11325034)
chr7 (61-95)||(17809451-17809485)
[»] chr3 (17 HSPs)
chr3 (58-111)||(3449366-3449419)
chr3 (57-113)||(29067283-29067339)
chr3 (57-113)||(25870450-25870506)
chr3 (61-113)||(27676355-27676407)
chr3 (57-113)||(28745769-28745825)
chr3 (57-112)||(20756039-20756094)
chr3 (69-113)||(22356139-22356183)
chr3 (68-108)||(42696870-42696910)
chr3 (68-107)||(17064326-17064365)
chr3 (57-112)||(22137278-22137333)
chr3 (57-112)||(24649763-24649818)
chr3 (57-103)||(21963438-21963484)
chr3 (57-103)||(21985874-21985920)
chr3 (61-111)||(28135723-28135773)
chr3 (68-113)||(24620288-24620333)
chr3 (69-113)||(8156217-8156261)
chr3 (61-113)||(15806584-15806635)
[»] chr2 (12 HSPs)
chr2 (57-113)||(1404782-1404838)
chr2 (61-113)||(15266081-15266133)
chr2 (57-113)||(1690836-1690892)
chr2 (57-113)||(31238051-31238107)
chr2 (57-111)||(35566028-35566082)
chr2 (66-115)||(15627652-15627701)
chr2 (57-114)||(23863395-23863452)
chr2 (69-113)||(19245152-19245196)
chr2 (57-113)||(30432418-30432474)
chr2 (57-113)||(36429847-36429903)
chr2 (68-114)||(24473334-24473380)
chr2 (57-113)||(15588924-15588979)
[»] chr5 (11 HSPs)
chr5 (57-112)||(43234868-43234923)
chr5 (57-111)||(23172506-23172560)
chr5 (57-113)||(18051604-18051660)
chr5 (57-113)||(22645793-22645849)
chr5 (57-112)||(20923718-20923773)
chr5 (57-113)||(21059229-21059285)
chr5 (57-108)||(24106645-24106696)
chr5 (57-111)||(18843716-18843770)
chr5 (58-112)||(38158329-38158383)
chr5 (57-110)||(19042463-19042516)
chr5 (57-114)||(19578940-19578997)
[»] scaffold0186 (1 HSPs)
scaffold0186 (57-113)||(8442-8498)
[»] scaffold0417 (1 HSPs)
scaffold0417 (58-113)||(7530-7585)
[»] scaffold0042 (1 HSPs)
scaffold0042 (68-114)||(93789-93835)
[»] scaffold0510 (1 HSPs)
scaffold0510 (57-114)||(175-232)
[»] scaffold0603 (1 HSPs)
scaffold0603 (65-113)||(9102-9150)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 477121 - 477261
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgtggacgtatatatggccggtggttttggaaaattaaatcgagg 156  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  477121 gaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgacaacaatgtgaacgtatatatggccggtggttttggaaaattaaatcgagg 477220  T
Q  157 agaccattatttgtgcgggaagggaagccaactgcgagtgatgatg 202  Q
    ||||||||||||||||     |||||||||||||||||||||||||    
T  477221 agaccattatttgtgc-----gggaagccaactgcgagtgatgatg 477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 5922104 - 5922048
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5922104 gaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaatg 5922048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 11879655 - 11879599
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  11879655 gaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaatg 11879599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 11897071 - 11897015
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  11897071 gaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaatg 11897015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 31424218 - 31424162
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||    
T  31424218 gaagaaagtcgtaaaatcctgaattttagaatttaagtcaggattttgacaataatg 31424162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 9036758 - 9036801
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  9036758 caaaatcctgaattttaggatttaagtcaggtttttgacaacaa 9036801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 17647048 - 17646993
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||    
T  17647048 gaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaat 17646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 15294721 - 15294672
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15294721 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 15475090 - 15475041
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15475090 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 23136393 - 23136348
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  23136393 caaaatcctgaattttaggatttaagtcgggattttgacaataatg 23136348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 24056646 - 24056699
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||| |||||||||| |||||||||||||||||| |||||||| ||||||||    
T  24056646 aaagtcgcaaaatcctggattttaggatttaagtcaagattttgataacaatgt 24056699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 15761521 - 15761569
Alignment:
Q  65 tcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||| | |||||||||||||||  ||||||||||||||||    
T  15761521 tcacaaaatcctggagtttaggatttaagtcgagattttgacaacaatg 15761569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 45403083 - 45403029
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||| ||||||| || ||||||| |||||||||  |||||||||||||||    
T  45403083 aagaaagtcgcaaaatcttggattttagaatttaagtcgcgattttgacaacaat 45403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 27836549 - 27836594
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||    
T  27836549 caaaatcctgaattttaggatctaagtttgaattttgacaacaatg 27836594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 22910276 - 22910332
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||  |||||||| |||||||||||||||||| |||| || ||| |||||    
T  22910276 gaagaaagtcgtaaaatcctaaattttaggatttaagtcgggatgtttacatcaatg 22910332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 5362037 - 5362094
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5362037 gaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatgt 5362094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 8889283 - 8889227
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  8889283 gaagaaattcacaaaatcctggattttaggatttaagtcgggattttgacatcaatg 8889227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 8011290 - 8011345
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||    
T  8011290 gaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaacaat 8011345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 4156814 - 4156763
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  4156814 aaagtcataaaatcctaaattttaagatttaagtcgggattttgacaacaat 4156763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 9149813 - 9149864
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||| |||||    
T  9149813 aaagtcgcaaaatcctaaattttaggatttaagtcgggattttgaccacaat 9149864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 13023623 - 13023566
Alignment:
Q  57 gaagaaagtcacaaaatcctgaatttt-aggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||||| |||||| |||||||||||  |||||||||||||||||    
T  13023623 gaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaacaatg 13023566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 13551700 - 13551752
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  13551700 aaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaatg 13551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 7044771 - 7044728
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    ||||||| || ||||||||||||||||| |||||||||||||||    
T  7044771 caaaatcatggattttaggatttaagtcgggattttgacaacaa 7044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 7815608 - 7815561
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 108  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  7815608 aaagtcacaaaatgctgtattttaggatttaagtcgggattttaacaa 7815561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 8744087 - 8744132
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  8744087 caaaatcctgaatttttggatttaagtcggaatttcgacaacaatg 8744132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 24719568 - 24719516
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||||||| |||||||||| | |||||||  ||||||||||||||||    
T  24719568 aaagtcgcaaaatcttgaattttagaaattaagtcgagattttgacaacaatg 24719516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 25146842 - 25146899
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  25146842 gaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaatgt 25146899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 16125533 - 16125580
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttga 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16125533 aagaaagtcgcaaaatcctgaattttaggatttaagtcaggattttga 16125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 19010024 - 19010073
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  19010024 aaagtcgcaaaatcctgaattttaggatttaagtccggattttgacaaca 19010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 9352137 - 9352193
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||    
T  9352137 gaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaatg 9352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 9955109 - 9955165
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||    
T  9955109 gaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatg 9955165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 23528711 - 23528656
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| ||||||||||||||||| |||||||||  ||||||||||||||||    
T  23528711 gaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaat 23528656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 30619130 - 30619075
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||    
T  30619130 gaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaat 30619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 9327291 - 9327345
Alignment:
Q  59 agaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||    
T  9327291 agaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaacaatg 9327345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 42180139 - 42180193
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    |||||||||| |||||||||||||||||| ||||||||  |||||||||||||||    
T  42180139 gaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaacaa 42180193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 18304885 - 18304941
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||| ||| ||||||||||||||||  |||||||||||||||||    
T  18304885 gaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaacaatg 18304941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 21846346 - 21846398
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| |||||||||| |||||||||||||| || |||||||||||||||||    
T  21846346 aaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaatg 21846398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 34478844 - 34478900
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||||  ||||||| |||||||||| ||||||| |||||||||    
T  34478844 gaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaatg 34478900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 13276340 - 13276395
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||  |||||||||||||| || ||||||||||||||||    
T  13276340 gaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaat 13276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 14074444 - 14074499
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||  ||||||||||||||| | ||||||||||||||||    
T  14074444 gaagaaagtcgcaaaatcctacattttaggatttaagacgggattttgacaacaat 14074499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 12513336 - 12513283
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||||||| |||||||||  ||| ||||||||||||| ||||||||||||||    
T  12513336 gaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 17056084 - 17056129
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||    
T  17056084 caaaatcctggattttaggatttaaatcaggattttgactacaatg 17056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 47785836 - 47785791
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||    
T  47785836 caaaatcctgaattttaggatttatgttgggattttgacaacaatg 47785791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 41032744 - 41032800
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||| || |||||||||||||| || ||||||||||  ||||||||||||||||    
T  41032744 gaagaaaatcgcaaaatcctgaattctacgatttaagtcgagattttgacaacaatg 41032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 12800655 - 12800710
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||||  |||||||| |||||||||||||||||  ||||||| ||||||||    
T  12800655 gaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaat 12800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 12003241 - 12003289
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaac 109  Q
    |||||||||||| |||||||||||  | ||||||| |||||||||||||    
T  12003241 aaagtcacaaaaacctgaattttaaaacttaagtcgggattttgacaac 12003289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 6943534 - 6943590
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  6943534 gaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatg 6943590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 15528184 - 15528239
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  15528184 gaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 15528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 7223574 - 7223518
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  7223574 gaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaatg 7223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 30912486 - 30912543
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||    
T  30912486 gaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatgt 30912543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 10509097 - 10509153
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||    
T  10509097 gaagaaagtcacaaatttctgaattttaggatttaagtctggattttgacaataatg 10509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 17543818 - 17543870
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  17543818 aaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaacaatg 17543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 27233351 - 27233407
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||    
T  27233351 gaagaaagtcacaaaatcctggattttaggatttaagtcggtagtttgacaacaatg 27233407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 7918459 - 7918510
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  7918459 aaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 7918510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 17103246 - 17103201
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||    
T  17103246 caaaatcctgaattttaagatttaagtcgggattttgacaacaatg 17103201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 17250112 - 17250057
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||  |||||||||| ||||||||||||||||| ||||||| ||||||||    
T  17250112 gaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaat 17250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 26053370 - 26053425
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||  |||||| |||||||||| ||||||||||||||||    
T  26053370 gaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 26073423 - 26073478
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||  |||||| |||||||||| ||||||||||||||||    
T  26073423 gaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 5422833 - 5422878
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  5422833 caaaatcatgaattttagtatttaagtcgggattttgacaacaatg 5422878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 23897866 - 23897809
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| ||  |||||||||    
T  23897866 gaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaatgt 23897809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 10958266 - 10958317
Alignment:
Q  62 aagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||| ||||||||||||||||  ||||||||||  ||||||||||||||||    
T  10958266 aagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaacaatg 10958317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 2912323 - 2912373
Alignment:
Q  59 agaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaac 109  Q
    |||||||  ||||||||| ||||||| |||||||||| |||||||||||||    
T  2912323 agaaagttgcaaaatcctaaattttaagatttaagtcgggattttgacaac 2912373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 18491122 - 18491167
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  18491122 caaaattctggattttaggatttaagtcgggattttgacagcaatg 18491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 8545043 - 8545087
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttga 105  Q
    |||||| ||||||||| ||||||||||||||| || |||||||||    
T  8545043 aaagtcgcaaaatcctaaattttaggatttaaatcgggattttga 8545087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 44944923 - 44944978
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  44944923 gaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 5715341 - 5715290
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  5715341 aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 5715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 22687738 - 22687793
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  22687738 gaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaacaat 22687793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 7730417 - 7730473
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  7730417 gaagaaagtcgcaaaa-cctggattttaggatttaagtcaggattttgacaacaatgt 7730473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 8330119 - 8330175
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  8330119 gaagaaagtcgcaaaatcatgaattttagaatttaggtcaggattttgacaacaatg 8330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 26281383 - 26281439
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||    
T  26281383 gaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaatg 26281439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 4247411 - 4247356
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||| |||||||||||||||||||||||||| |  ||||||||||||||||    
T  4247411 gaagaaagttacaaaatcctgaattttaggatttaaattgggattttgacaacaat 4247356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 11326441 - 11326386
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||    
T  11326441 gaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 11326386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 21846503 - 21846554
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  21846503 aaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 21846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 5058584 - 5058530
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    ||||||| || |||||| ||||||||||||||||||||| |||||||||||||||    
T  5058584 gaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaacaa 5058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 24990146 - 24990200
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  24990146 aagaaagtcacaaaatcctaaatttttggatttaagtcggaattttgacaacaat 24990200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 24725551 - 24725607
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||  |||||| || ||||||||||||||||| |||||||||||||||||    
T  24725551 gaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaacaatg 24725607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 27221473 - 27221417
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||||||||||| ||||||||  ||||||| |||||||||    
T  27221473 gaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaacaatg 27221417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 39182310 - 39182258
Alignment:
Q  62 aagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    ||||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  39182310 aagtcgcaaaatcctagattttaggatttaagtcaggattttgtcaacaatgt 39182258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 30294222 - 30294175
Alignment:
Q  65 tcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  30294222 tcacaaaatcctggattttaggatttaagttgggattttgacaacaat 30294175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 8346607 - 8346660
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||||||| ||||||||| |||||||  ||||| ||||||||||||||||||    
T  8346607 gaagaaagtcgcaaaatcctaaattttaatatttaggtcaggattttgacaaca 8346660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 8343874 - 8343930
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||| | ||||||||||||| | || ||||||||||||||||    
T  8343874 gaagaaagtcgcaaaatccaggattttaggatttaggccaagattttgacaacaatg 8343930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 9685322 - 9685374
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  9685322 aaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaatg 9685374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 21157852 - 21157904
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| ||||| ||||||||||| |||||||||||| |||| ||||||||||    
T  21157852 aaagtcgcaaaaccctgaattttaagatttaagtcagaatttcgacaacaatg 21157904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 26565706 - 26565758
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||| ||||||| |||||||||| |||||||| ||| |||||||||||||||    
T  26565706 aaagttacaaaattctgaattttatgatttaaggcagaattttgacaacaatg 26565758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 26617554 - 26617606
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| |||||||||||||||||||||| ||||||| ||||| | |||||||    
T  26617554 aaagtcgcaaaatcctgaattttaggattaaagtcagaattttcaaaacaatg 26617606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 11325034 - 11324988
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 103  Q
    ||||||| || ||||||| |||||||||||||||||||| |||||||    
T  11325034 gaagaaaatcccaaaatcatgaattttaggatttaagtcgggatttt 11324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 17809451 - 17809485
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtc 95  Q
    ||||||||||||||||||||||| |||||||||||    
T  17809451 aaagtcacaaaatcctgaattttgggatttaagtc 17809485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 3449366 - 3449419
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  3449366 aagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 3449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 29067339 - 29067283
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  29067339 gaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaatg 29067283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 25870450 - 25870506
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  25870450 gaagaaagtcacaaaatcttggattttaggatttaagtcgagattttgacaacaatg 25870506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 27676407 - 27676355
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  27676407 aaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaacaatg 27676355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 28745825 - 28745769
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||    
T  28745825 gaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaatg 28745769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 20756094 - 20756039
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||| || |||||||||||||||||  ||||||||| ||||||||||||||||    
T  20756094 gaagaaaatcgcaaaatcctgaattttataatttaagtcgggattttgacaacaat 20756039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 22356139 - 22356183
Alignment:
Q  69 aaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||    
T  22356139 aaaatcctgaattttaggatttaagtcggaattttgataacaatg 22356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 42696910 - 42696870
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaa 108  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  42696910 caaaatcctgaattttatgatttaagtcgggattttgacaa 42696870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 17064365 - 17064326
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgaca 107  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  17064365 caaaatcctgaattttaagatttaagtcgggattttgaca 17064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 22137333 - 22137278
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||||  || ||| |||||||||||||||||||||||||||| | ||||||    
T  22137333 gaagaaagtcgtaacatcttgaattttaggatttaagtcaggattttaaaaacaat 22137278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 24649763 - 24649818
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||| |||||| ||||||||  |||||| |||||||||| ||||||||||||||||    
T  24649763 gaagcaagtcaaaaaatcctagattttacgatttaagtcgggattttgacaacaat 24649818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 21963484 - 21963438
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 103  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||||    
T  21963484 gaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 21985920 - 21985874
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 103  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||||    
T  21985920 gaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 28135773 - 28135723
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    |||||| ||||||||||||||||| ||||||| || | |||||||||||||    
T  28135773 aaagtcgcaaaatcctgaattttacgatttaaatcggaattttgacaacaa 28135723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 24620288 - 24620333
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||| | |||||||||||||||||| | |||||||||||||||    
T  24620288 caaaatcttaaattttaggatttaagtcggaattttgacaacaatg 24620333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 8156217 - 8156261
Alignment:
Q  69 aaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||    
T  8156217 aaaattctgaattttagaatttaagttgggattttgacaacaatg 8156261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 15806584 - 15806635
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||| |||||| ||| ||| ||||||||||||| |||||||||||||||||    
T  15806584 aaagtcgcaaaattctggattgtaggatttaagtc-ggattttgacaacaatg 15806635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 1404838 - 1404782
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  1404838 gaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaatg 1404782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 15266133 - 15266081
Alignment:
Q  61 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  15266133 aaagttacaaaatcctgaattttaggatttaaatcatgattttgacaacaatg 15266081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 1690836 - 1690892
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||||||||||||| ||||||| |||||||||| |  ||||||||||||||    
T  1690836 gaagaaagtcacaaaatcctaaattttaagatttaagtcggagttttgacaacaatg 1690892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 31238051 - 31238107
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||  |||||||||  ||||||||||||||||| |||||||||||||||||    
T  31238051 gaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaatg 31238107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 35566028 - 35566082
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    |||||||||| ||||||||||||||||  |||||||||  |||||||||||||||    
T  35566028 gaagaaagtcgcaaaatcctgaattttgtgatttaagttgggattttgacaacaa 35566082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 15627701 - 15627652
Alignment:
Q  66 cacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgtg 115  Q
    ||||||||| | |||||||||||||||||| |||||||||||| ||||||    
T  15627701 cacaaaatcataaattttaggatttaagtcgggattttgacaataatgtg 15627652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 23863395 - 23863452
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| |||||| ||  ||||||| ||||||||| ||||||||||||||||||    
T  23863395 gaagaaagtcgcaaaattctcgattttagaatttaagtcgggattttgacaacaatgt 23863452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 19245196 - 19245152
Alignment:
Q  69 aaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||    
T  19245196 aaaatcctgaattttaaaatttaagtcgggattttgacaacaatg 19245152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 30432474 - 30432418
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||  ||||||||  ||||||| |||||| ||||||||||||||||||||    
T  30432474 gaagaaagtcgaaaaatcctagattttagaatttaaatcaggattttgacaacaatg 30432418  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 36429903 - 36429847
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||  ||| ||||||||||||  |||||||||||||||||    
T  36429903 gaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaatg 36429847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 24473380 - 24473334
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  24473380 caaaatcctgaattttgggacttaagtcacgatttcgacaacaatgt 24473334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 15588924 - 15588979
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||| | ||||||||||||||||| || ||||||| ||||||||||| |||||    
T  15588924 gaagaaagacgcaaaatcctgaattttaaga-ttaagtcgggattttgacagcaatg 15588979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 43234923 - 43234868
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  43234923 gaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaacaat 43234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 23172506 - 23172560
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  23172506 gaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 18051604 - 18051660
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||  ||||||||||||||||| |||||||||||||||||    
T  18051604 gaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaatg 18051660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 22645793 - 22645849
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||    
T  22645793 gaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaatg 22645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 20923773 - 20923718
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    |||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||    
T  20923773 gaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaat 20923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 21059229 - 21059285
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| |||||||||  |||||||||||||| || |||||||||||||||||    
T  21059229 gaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaatg 21059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 24106696 - 24106645
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 108  Q
    |||||||||  ||||||||||||||||| ||||||| |||||||||||||||    
T  24106696 gaagaaagttgcaaaatcctgaattttatgatttaaatcaggattttgacaa 24106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 18843770 - 18843716
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 111  Q
    |||||||||| |||||||||||||| ||||||||||||| | ||||| |||||||    
T  18843770 gaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaacaacaa 18843716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 38158329 - 38158383
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 112  Q
    ||||||||| |||||||||  ||||||||||||||||| | ||||||||||||||    
T  38158329 aagaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaacaat 38158383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 19042463 - 19042516
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 110  Q
    |||||||||||||||||| | |||||||| ||||||||  ||||||||||||||    
T  19042463 gaagaaagtcacaaaatcttaaattttagaatttaagttgggattttgacaaca 19042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 19578997 - 19578940
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    ||||||| || |||||||||| |||||| |||||||||  | ||||||||||||||||    
T  19578997 gaagaaaatcgcaaaatcctggattttatgatttaagttggaattttgacaacaatgt 19578940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 8498 - 8442
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    |||||||||| ||||||| || ||||||||||||||||  |||||||||||||||||    
T  8498 gaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaatg 8442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 7530 - 7585
Alignment:
Q  58 aagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||| | |||||||||    
T  7530 aagaaagtcgcaaaatcctgaattttagaatttaagtcgggattctaacaacaatg 7585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 93789 - 93835
Alignment:
Q  68 caaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  93789 caaaattctggattttaggatttaagtcgggattttgacaacaatgt 93835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 175 - 232
Alignment:
Q  57 gaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 114  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| ||  |||||||||    
T  175 gaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaatgt 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 9102 - 9150
Alignment:
Q  65 tcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 113  Q
    ||||||||||||  ||||||  |||||| ||||||||||||||||||||    
T  9102 tcacaaaatcctacattttaaaatttaaatcaggattttgacaacaatg 9150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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