View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0892_high_1 (Length: 540)

Name: NF0892_high_1
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0892_high_1
NF0892_high_1
[»] scaffold0177 (10 HSPs)
scaffold0177 (1-505)||(21631-22135)
scaffold0177 (137-540)||(21765-22167)
scaffold0177 (1-337)||(21630-21966)
scaffold0177 (36-237)||(22811-23012)
scaffold0177 (204-406)||(22811-23012)
scaffold0177 (373-540)||(22846-23012)
scaffold0177 (228-338)||(21442-21552)
scaffold0177 (397-505)||(21444-21552)
scaffold0177 (60-169)||(21442-21552)
scaffold0177 (1-69)||(22811-22879)
[»] chr2 (4 HSPs)
chr2 (1-540)||(33866093-33866630)
chr2 (1-413)||(33866261-33866672)
chr2 (129-540)||(33866053-33866462)
chr2 (270-540)||(33866026-33866294)
[»] chr7 (16 HSPs)
chr7 (320-534)||(40589639-40589853)
chr7 (164-365)||(40589639-40589840)
chr7 (1-196)||(40589639-40589835)
chr7 (165-234)||(43181223-43181292)
chr7 (334-403)||(43181223-43181292)
chr7 (165-234)||(43181292-43181361)
chr7 (334-403)||(43181292-43181361)
chr7 (1-66)||(43181227-43181292)
chr7 (1-66)||(43181296-43181361)
chr7 (489-540)||(40589802-40589853)
chr7 (165-225)||(43181361-43181421)
chr7 (334-394)||(43181361-43181421)
chr7 (1-57)||(43181365-43181421)
chr7 (507-540)||(43181227-43181260)
chr7 (507-540)||(43181296-43181329)
chr7 (507-540)||(43181365-43181398)
[»] chr6 (7 HSPs)
chr6 (317-523)||(27901531-27901736)
chr6 (1-185)||(27901531-27901715)
chr6 (164-354)||(27901531-27901720)
chr6 (388-534)||(19284438-19284584)
chr6 (219-365)||(19284438-19284584)
chr6 (51-196)||(19284438-19284584)
chr6 (486-540)||(27901682-27901736)
[»] scaffold0320 (4 HSPs)
scaffold0320 (210-395)||(1-199)
scaffold0320 (379-540)||(1-175)
scaffold0320 (42-226)||(1-199)
scaffold0320 (1-58)||(142-199)
[»] scaffold1425 (6 HSPs)
scaffold1425 (210-343)||(1-134)
scaffold1425 (379-512)||(1-134)
scaffold1425 (334-446)||(1720-1832)
scaffold1425 (165-277)||(1720-1832)
scaffold1425 (1-109)||(1724-1832)
scaffold1425 (42-174)||(1-134)
[»] chr3 (3 HSPs)
chr3 (377-533)||(2941043-2941198)
chr3 (208-364)||(2941043-2941198)
chr3 (40-195)||(2941043-2941198)
[»] scaffold0585 (3 HSPs)
scaffold0585 (270-361)||(1590-1681)
scaffold0585 (439-530)||(1590-1681)
scaffold0585 (102-192)||(1590-1681)
[»] chr8 (12 HSPs)
chr8 (320-529)||(24632498-24632718)
chr8 (9-261)||(24631911-24632179)
chr8 (164-430)||(24631911-24632192)
chr8 (164-360)||(24632498-24632705)
chr8 (208-342)||(22651306-22651439)
chr8 (40-148)||(22651331-22651439)
chr8 (9-92)||(24632608-24632692)
chr8 (377-520)||(22651297-22651439)
chr8 (330-410)||(24632115-24632195)
chr8 (259-429)||(24632276-24632446)
chr8 (192-260)||(24632276-24632345)
chr8 (24-92)||(24632276-24632345)
[»] chr1 (6 HSPs)
chr1 (5-73)||(33036753-33036821)
chr1 (173-241)||(33036753-33036821)
chr1 (5-73)||(33036845-33036913)
chr1 (173-241)||(33036845-33036913)
chr1 (342-410)||(33036753-33036821)
chr1 (342-410)||(33036845-33036913)
[»] scaffold0036 (6 HSPs)
scaffold0036 (272-331)||(93246-93305)
scaffold0036 (441-500)||(93246-93305)
scaffold0036 (272-331)||(93305-93364)
scaffold0036 (441-500)||(93305-93364)
scaffold0036 (272-316)||(93364-93408)
scaffold0036 (441-485)||(93364-93408)
[»] chr4 (12 HSPs)
chr4 (157-204)||(15983840-15983887)
chr4 (157-204)||(15983907-15983954)
chr4 (157-204)||(15983974-15984021)
chr4 (326-373)||(15983840-15983887)
chr4 (326-373)||(15983907-15983954)
chr4 (326-373)||(15983974-15984021)
chr4 (495-540)||(15983840-15983885)
chr4 (495-540)||(15983907-15983952)
chr4 (495-540)||(15983974-15984019)
chr4 (1-36)||(15983852-15983887)
chr4 (1-36)||(15983919-15983954)
chr4 (1-36)||(15983986-15984021)


Alignment Details
Target: scaffold0177 (Bit Score: 342; Significance: 0; HSPs: 10)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 22135 - 21631
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||    
T  22135 ttctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataaaatttaaattaagtttgtctcccaaggaggaa 22036  T
Q  101 cctttggtgaccaaaattta-tcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatga 199  Q
    |||||||||||||||||||| |   | ||||| ||||||| |||||||| ||||  ||||| |  ||||||||||| ||||||||||| |||||||||||    
T  22035 cctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattcattctagtaatgtaatactacttttatgatga 21936  T
Q  200 ttatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttt 299  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |||     
T  21935 ttatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgaccaaaattta-tcctaccttc 21837  T
Q  300 tttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttcccta 399  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21836 tttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatgattatggacctaattaagaagttacttcccta 21737  T
Q  400 aaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaata 499  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||||| |||||||||||    
T  21736 aaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgaccaaaatttaatccgaacttgtatggcttgaattcttgccaaatgcctaata 21637  T
Q  500 tagttc 505  Q
    ||||||    
T  21636 tagttc 21631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 137 - 540
Target Start/End: Complemental strand, 22167 - 21765
Alignment:
Q  137 ttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataa 236  Q
    |||||||||||| ||||  ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22167 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataa 22068  T
Q  237 agtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttc 336  Q
    | ||||||||||||| |||||| |||||||||||||||||||||||||||||||   ||||||| ||| ||| ||||||||| ||||||||||||| |||    
T  22067 aatttaaattaagtttgtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattc 21968  T
Q  337 attctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggagga 436  Q
    |||||||| || |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21967 attctagtaatgtaatactacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggagga 21868  T
Q  437 acctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaattttatgatg 536  Q
    |||||||||||||||||||| |||| | ||| ||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  21867 acctttggtgaccaaaattt-atcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatg 21769  T
Q  537 atta 540  Q
    ||||    
T  21768 atta 21765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21966 - 21630
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    ||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21966 ttctagtaatgtaatactacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaa 21867  T
Q  101 cctttggtgaccaaaatttatcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatgat 200  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||  ||||| | ||||||||||||| |||||||||||||||||||||||    
T  21866 cctttggtgaccaaaatttatcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatgat 21767  T
Q  201 tatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaactttt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  21766 tatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgaccaaaatttaatccgaacttgt 21667  T
Q  301 ttggtttggattcttgcctaatgcctaatatagttca 337  Q
     ||| ||| ||||||||| ||||||||||||||||||    
T  21666 atggcttgaattcttgccaaatgcctaatatagttca 21630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 23012 - 22811
Alignment:
Q  36 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttatcccaccttttttgg 135  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaatttatcctaccttttttgg 22913  T
Q  136 cttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaata 235  Q
    ||||||||||||  ||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22912 cttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaata 22813  T
Q  236 aa 237  Q
    ||    
T  22812 aa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 204 - 406
Target Start/End: Complemental strand, 23012 - 22811
Alignment:
Q  204 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttg 303  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| | ||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttg 22914  T
Q  304 gtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 403  Q
    | ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22913 gcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaat 22814  T
Q  404 aaa 406  Q
    |||    
T  22813 aaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 373 - 540
Target Start/End: Complemental strand, 23012 - 22846
Alignment:
Q  373 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttg 472  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| | ||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttg 22914  T
Q  473 gtttggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    | ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22913 gcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgatta 22846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 228 - 338
Target Start/End: Complemental strand, 21552 - 21442
Alignment:
Q  228 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgccta 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||| ||||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  328 atatagttcat 338  Q
    |||||||||||    
T  21452 atatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 397 - 505
Target Start/End: Complemental strand, 21552 - 21444
Alignment:
Q  397 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgccta 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||| ||||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  497 atatagttc 505  Q
    |||||||||    
T  21452 atatagttc 21444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 21552 - 21442
Alignment:
Q  60 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattt-atcccaccttttttggcttggattcttgctaaatatcta 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||| |||||||||||||| ||||| |||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  159 attttgttcat 169  Q
    || | ||||||    
T  21452 atatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22879 - 22811
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaa 69  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22879 ttctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaataaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 33866093 - 33866630
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    ||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||  ||| ||||||||||||  |||||||||||||||||||||||||||    
T  33866093 ttctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataaagtacaaattaagttcgtctccaaaggaggaa 33866192  T
Q  101 cctttggtgaccaaaattt-atcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatga 199  Q
    ||||||||||||||||||| |||| | |||||| ||||| ||||||||| ||||   |  | | |||||||||| |||||||||||||||| ||||||||    
T  33866193 cctttggtgaccaaaattttatcctaacttttt-ggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctatgatga 33866291  T
Q  200 ttatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttt 299  Q
    |||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | ||||    
T  33866292 ttatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgaccaaaattttatcctaccttt 33866391  T
Q  300 tttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttcccta 399  Q
    || || ||||||||||||  |||| ||  |||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||| ||| ||||    
T  33866392 tt-ggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgattatggacctaattaacaagtttctttccta 33866490  T
Q  400 aaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaata 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||||||| || ||||||| || |||| ||  ||    
T  33866491 aaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcc-tacctttttggcttcgattctttccaaatgtctgcta 33866589  T
Q  500 tagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||||| ||||| |||||||||||| ||| |||||||||||    
T  33866590 tagttcattctatttatgtaatactcattgtatgatgatta 33866630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 33866261 - 33866672
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  33866261 ttctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggaggaa 33866360  T
Q  101 cctttggtgaccaaaattt-atcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatga 199  Q
    | | ||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||  | | |||||||||| |||||||||||| ||| ||||||||    
T  33866361 cttctggtgaccaaaattttatcctacctttt-tggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtatgatga 33866459  T
Q  200 ttatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttt 299  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||    
T  33866460 ttatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcc-tacctt 33866558  T
Q  300 tttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttcccta 399  Q
    ||||| || ||||||| || |||| ||  |||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  33866559 tttggcttcgattctttccaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgattatggacctaattaacaagtttcttcccta 33866658  T
Q  400 aaataaagtttaaa 413  Q
    ||||||||||||||    
T  33866659 aaataaagtttaaa 33866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 129 - 540
Target Start/End: Original strand, 33866053 - 33866462
Alignment:
Q  129 tttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccc 228  Q
    |||||| ||||||||||||  |||| |||  | | |||||||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||  ||| |    
T  33866053 tttttgacttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctc 33866152  T
Q  229 taaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaa 328  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||| ||||||||| ||||| |      
T  33866153 taaaataaagtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaactttttggctttg-attcttgccaaatgcttgc 33866251  T
Q  329 tatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctcca 428  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  33866252 tatagttcattctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctcca 33866351  T
Q  429 aaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaatt 528  Q
    |||||||||| | ||||||||||||||| ||||  || ||||||| ||||||||||||  |||| ||  |||||||| ||||| |||||||||||| |||    
T  33866352 aaggaggaacttctggtgaccaaaattttatcc-tacctttttggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcatt 33866450  T
Q  529 ttatgatgatta 540  Q
     |||||||||||    
T  33866451 gtatgatgatta 33866462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 270 - 540
Target Start/End: Original strand, 33866026 - 33866294
Alignment:
Q  270 ctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatgatgat 369  Q
    |||||||||||||||||| ||  | || ||||||  ||||||||||| | |||| ||  |||||||||||||| |||| ||||||| ||| | |||||||    
T  33866026 ctttggtgaccaaaattttat-gatacctttttgacttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgat 33866124  T
Q  370 tatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaactttt 469  Q
    |||||||| ||||||||||||  ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||    
T  33866125 tatggacccaattaacaagttttttctctaaaataaagtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaac-ttt 33866223  T
Q  470 ttggtttggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||| || |||||||||| ||||| |  |||||||| ||||| |||||||||||||||| |||||||||||    
T  33866224 ttggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctatgatgatta 33866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 320 - 534
Target Start/End: Complemental strand, 40589853 - 40589639
Alignment:
Q  320 aatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 419  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40589853 aatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagt 40589754  T
Q  420 tcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcgttctagttatgta 519  Q
     |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  40589753 acgtctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgta 40589654  T
Q  520 atactaattttatga 534  Q
    |||||||||||||||    
T  40589653 atactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 164 - 365
Target Start/End: Complemental strand, 40589840 - 40589639
Alignment:
Q  164 gttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  40589840 gttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgtctccaaatg 40589741  T
Q  264 aggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttat 363  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  40589740 aggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatactaattttat 40589641  T
Q  364 ga 365  Q
    ||    
T  40589640 ga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40589835 - 40589639
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||    
T  40589835 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgtctccaaatgaggaa 40589736  T
Q  101 cctttggtgaccaaaattt-atcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatga 196  Q
    ||||||||||||||||||| |||| | ||||||||| |||||||||||| ||||  ||||| | ||||||| |||||||||||||||||||||||||    
T  40589735 cctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  165 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 234  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  334 ttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 403  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  165 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 234  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  334 ttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 403  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43181227 - 43181292
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 66  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181227 ttctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43181296 - 43181361
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 66  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181296 ttctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 40589853 - 40589802
Alignment:
Q  489 aatgcctaatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40589853 aatgcctaatatagttcattctagttatgtaatactaattttatgatgatta 40589802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
Q  165 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttactt 225  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
Q  334 ttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttactt 394  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43181365 - 43181421
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttactt 57  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  43181365 ttctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 43181227 - 43181260
Alignment:
Q  507 ttctagttatgtaatactaattttatgatgatta 540  Q
    |||||||||| |||||||||||||||||||||||    
T  43181227 ttctagttatataatactaattttatgatgatta 43181260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 43181296 - 43181329
Alignment:
Q  507 ttctagttatgtaatactaattttatgatgatta 540  Q
    |||||||||| |||||||||||||||||||||||    
T  43181296 ttctagttatataatactaattttatgatgatta 43181329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 43181365 - 43181398
Alignment:
Q  507 ttctagttatgtaatactaattttatgatgatta 540  Q
    |||||||||| |||||||||||||||||||||||    
T  43181365 ttctagttatataatactaattttatgatgatta 43181398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 317 - 523
Target Start/End: Complemental strand, 27901736 - 27901531
Alignment:
Q  317 cctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaatta 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27901736 cctaatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaatta 27901637  T
Q  417 agttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcgttctagttat 516  Q
    |||||||||||||||||||||||||| || |||||||||| |||| | ||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||    
T  27901636 agttcgtctccaaaggaggaacctttcgtaaccaaaattt-atcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttat 27901538  T
Q  517 gtaatac 523  Q
    |||||||    
T  27901537 gtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27901715 - 27901531
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27901715 ttctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 27901616  T
Q  101 cctttggtgaccaaaatttatcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatac 185  Q
    ||||| || |||||||||||||| |||||||||||||||||||||||| ||||  ||||| | ||||||||||||||||||||||    
T  27901615 cctttcgtaaccaaaatttatcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 164 - 354
Target Start/End: Complemental strand, 27901720 - 27901531
Alignment:
Q  164 gttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagg 263  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27901720 gttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgtctccaaagg 27901621  T
Q  264 aggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatac 354  Q
    |||||||||| || |||||||||| |||| | ||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  27901620 aggaacctttcgtaaccaaaattt-atcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 388 - 534
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  388 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  488 taatgcctaatatagttcgttctagttatgtaatactaattttatga 534  Q
     ||| || | |||||||| ||||||||||||||||||| ||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 219 - 365
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  219 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  319 taatgcctaatatagttcattctagttatttaatactaattttatga 365  Q
     ||| || | ||||||||||||||||||| |||||||| ||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  51 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattt-atcccaccttttttggcttggattcttgct 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |  |||||||| ||||||||||||     
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  150 aaatatctaattttgttcattctagttatgtaatactaattttatga 196  Q
    ||||  | | | | |||||||||||||||||||||||| ||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 27901736 - 27901682
Alignment:
Q  486 cctaatgcctaatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  27901736 cctaatgcctaatatagttcattctagttatttaatactaattttatgatgatta 27901682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 210 - 395
Target Start/End: Original strand, 1 - 199
Alignment:
Q  210 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttgg 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  310 attcttgcc-------------taatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttc 395  Q
    |||||||||              |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 379 - 540
Target Start/End: Original strand, 1 - 175
Alignment:
Q  379 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttgg 478  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  479 attcttgcctaatg-------------cctaatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    ||||||||| ||||             |||||||||| || ||||||||||||||||||||||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgatta 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 1 - 199
Alignment:
Q  42 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattt-atcccaccttttttggcttgg 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  141 attcttgc-------------taaatatctaattttgttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttc 226  Q
    ||||||||             |||||  ||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 142 - 199
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttc 58  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  142 ttctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 1 - 134
Alignment:
Q  210 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttgg 309  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  310 attcttgcctaatgcctaatatagttcattctag 343  Q
    ||||||||||||||||||||||||||||||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 379 - 512
Target Start/End: Original strand, 1 - 134
Alignment:
Q  379 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttgg 478  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  479 attcttgcctaatgcctaatatagttcgttctag 512  Q
    ||||||||||||||||||||||||||| ||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 334 - 446
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  334 ttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 433  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  434 ggaacctttggtg 446  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  165 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 264  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  265 ggaacctttggtg 277  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1724 - 1832
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 100  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1724 ttctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaa 1823  T
Q  101 cctttggtg 109  Q
    |||||||||    
T  1824 cctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 1 - 134
Alignment:
Q  42 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattt-atcccaccttttttggcttgg 140  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| ||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  141 attcttgctaaatatctaattttgttcattctag 174  Q
    ||||||||  |||  ||||| | |||||||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 377 - 533
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  377 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggttt 476  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||||||| ||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T
Q  477 ggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaattttatg 533  Q
    |||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||    
T  2941099 ggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 208 - 364
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  208 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggttt 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||||||| ||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T
Q  308 ggattcttgcctaatgcctaatatagttcattctagttatttaatactaattttatg 364  Q
    |||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||    
T  2941099 ggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  40 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttatcccaccttttttggcttg 139  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaatttatcctaccttttttggattg 2941099  T
Q  140 gattcttgctaaatatctaattttgttcattctagttatgtaatactaattttatg 195  Q
    ||||||| | ||||  ||||| | ||||||||| ||||||||||||||||||||||    
T  2941098 gattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  270 ctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 361  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 439 - 530
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  439 ctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcgttctagttatgtaatactaatttt 530  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  102 ctttggtgaccaaaattta-tcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaatttt 192  Q
    ||||||||||||||||||| ||| | ||||||||| || |||||||||  |||  ||||| | ||||||||||||||| |||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 320 - 529
Target Start/End: Complemental strand, 24632718 - 24632498
Alignment:
Q  320 aatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaag 418  Q
    |||||||| ||||||||||| || | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  24632718 aatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgag 24632619  T
Q  419 ttcgtctcc---------aaaggaggaacctttggtgaccaaaatttaatccaaac-ttttttggtttggattcttgcctaatgcctaatatagttcgtt 508  Q
    |||||||||         |||||||||||||||| |||| ||||||| ||| || | |||||||| || ||| |||| | |||||| |  ||||||| ||    
T  24632618 ttcgtctccaactagaataaaggaggaacctttgttgactaaaattttatctaacctttttttggcttcgatacttggcaaatgccaacaatagttcatt 24632519  T
Q  509 ctagttatgtaatactaattt 529  Q
    ||| | |||||||||| ||||    
T  24632518 ctattgatgtaatactcattt 24632498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 24632179 - 24631911
Alignment:
Q  9 atgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctcc---------aaaggagg 98  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||         |||||||     
T  24632179 atgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagtttgtcaccaactagaataaaggagt 24632080  T
Q  99 aacctttggtgaccaaaa-tttatcccaccttttttggcttggattcttgctaaatatctaattttgttcattctagttatgtaatactaattttat--- 194  Q
    ||| |||| |||| |||| ||||||  |||||||||||||||||| ||||  |||| | || | | |||||||||| | |||||||| |  ||||||       
T  24632079 aacatttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaataatcgttttataat 24631980  T
Q  195 -gatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaaa 261  Q
      |||||| ||||| ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  24631979 gaatgattctggacataattaagaagttacttcccttaaataaagttttaaattgagttcttctccaaa 24631911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 164 - 430
Target Start/End: Complemental strand, 24632192 - 24631911
Alignment:
Q  164 gttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctcc---- 258  Q
    ||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||        
T  24632192 gttcattttattgatgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagtttgtcaccaact 24632093  T
Q  259 -----aaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaata 353  Q
         ||||||| ||| |||| |||| ||||||| |||  | ||||||||| |||||| ||||   ||||  || |||||||||||||| | || |||||    
T  24632092 agaataaaggagtaacatttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaata 24631993  T
Q  354 ctaattttat----gatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaaa 430  Q
     |  ||||||     |||||| ||||| ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  24631992 atcgttttataatgaatgattctggacataattaagaagttacttcccttaaataaagttttaaattgagttcttctccaaa 24631911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 360
Target Start/End: Complemental strand, 24632705 - 24632498
Alignment:
Q  164 gttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctcc---- 258  Q
    ||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||        
T  24632705 gttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagttcgtctccaact 24632606  T
Q  259 -----aaaggaggaacctttggtgaccaaaatttaatccaaac-ttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaat 352  Q
         |||||||||||||||| |||| ||||||| ||| || | |||||||| || ||| |||| | |||||| |  ||||||||||||| | || ||||    
T  24632605 agaataaaggaggaacctttgttgactaaaattttatctaacctttttttggcttcgatacttggcaaatgccaacaatagttcattctattgatgtaat 24632506  T
Q  353 actaattt 360  Q
    ||| ||||    
T  24632505 actcattt 24632498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 22651439 - 22651306
Alignment:
Q  208 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggttt 307  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||||| | ||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagctt 22651341  T
Q  308 ggattcttgcctaatgcctaatatagttcattcta 342  Q
    ||||||||||| | |||||| | ||||||||||||    
T  22651340 ggattcttgccaagtgcctactctagttcattcta 22651306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 22651439 - 22651331
Alignment:
Q  40 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttatcccaccttttttggcttg 139  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||| || ||||||||| |||||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaaccaaccttttttagcttg 22651340  T
Q  140 gattcttgc 148  Q
    |||||||||    
T  22651339 gattcttgc 22651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 24632692 - 24632608
Alignment:
Q  9 atgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaa 92  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  24632692 atgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 520
Target Start/End: Complemental strand, 22651439 - 22651297
Alignment:
Q  377 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccaaacttttttggttt 476  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||||| | ||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagctt 22651341  T
Q  477 ggattcttgcctaatgcctaatatagttcgttctagttatgtaa 520  Q
    ||||||||||| | |||||| | |||||| ||||| | ||||||    
T  22651340 ggattcttgccaagtgcctactctagttcattctattaatgtaa 22651297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 24632195 - 24632115
Alignment:
Q  330 atagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 410  Q
    |||||||||| || | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632195 atagttcattttattgatgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 429
Target Start/End: Complemental strand, 24632446 - 24632276
Alignment:
Q  259 aaaggaggaacctttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatatagttcattctagttatttaatactaat 358  Q
    |||||| ||||||||| ||||||||||||   | || |||||| |||| |||| |||  | |||||||| |||||| ||||| | | ||  || ||| |     
T  24632446 aaaggaagaacctttgttgaccaaaatttttgctaacctttttcggtt-ggatacttcgcaaatgcctactatagtccattcaattgatacaacactcaa 24632348  T
Q  359 tttatgatgattatggacctaattaacaagttacttccctaaaataaagt-ttaaattaagttcgtctccaa 429  Q
    | |||||| ||||||||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||    
T  24632347 tgtatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa 24632276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 24632345 - 24632276
Alignment:
Q  192 tatgatgattatggacctaattaacaagttacttccctaaaataaagt-ttaaattaagttcgtctccaa 260  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||    
T  24632345 tatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa 24632276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 24632345 - 24632276
Alignment:
Q  24 tatgatgattatggacctaattaacaagttacttccctaaaataaagt-ttaaattaagttcgtctccaa 92  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||    
T  24632345 tatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa 24632276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33036753 - 33036821
Alignment:
Q  5 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 73  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036753 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 33036753 - 33036821
Alignment:
Q  173 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 241  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036753 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33036845 - 33036913
Alignment:
Q  5 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 73  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036845 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 33036845 - 33036913
Alignment:
Q  173 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 241  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036845 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 33036753 - 33036821
Alignment:
Q  342 agttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 410  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036753 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 33036845 - 33036913
Alignment:
Q  342 agttatttaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 410  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036845 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 93246 - 93305
Alignment:
Q  272 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 93246 - 93305
Alignment:
Q  441 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 93305 - 93364
Alignment:
Q  272 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 93305 - 93364
Alignment:
Q  441 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgcctaatgcctaatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  272 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  441 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  157 taattttgttcattctagttatgtaatactaattttatgatgattatg 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  157 taattttgttcattctagttatgtaatactaattttatgatgattatg 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  157 taattttgttcattctagttatgtaatactaattttatgatgattatg 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  326 taatatagttcattctagttatttaatactaattttatgatgattatg 373  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  326 taatatagttcattctagttatttaatactaattttatgatgattatg 373  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  326 taatatagttcattctagttatttaatactaattttatgatgattatg 373  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 15983840 - 15983885
Alignment:
Q  495 taatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgatta 15983885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 15983907 - 15983952
Alignment:
Q  495 taatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgatta 15983952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 15983974 - 15984019
Alignment:
Q  495 taatatagttcgttctagttatgtaatactaattttatgatgatta 540  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgatta 15984019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15983852 - 15983887
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15983852 ttctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15983919 - 15983954
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15983919 ttctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15983986 - 15984021
Alignment:
Q  1 ttctagttatgtaatactaattttatgatgattatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15983986 ttctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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