View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0892_high_2 (Length: 444)
Name: NF0892_high_2
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0892_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 2743381 - 2742948
Alignment:
| Q |
1 |
tctggtggaaagtttgttatgatgtgcaacttcgtatattggaagatttctttggttcggatgaggtgttgtaagggaggagtattagattcgcttgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2743381 |
tctggtggaaagtttgttatgatgtgcaacttcgtatattggaagttttctttggttcggatgaggtgttgtaagggaggagtattagattcgcttgaga |
2743282 |
T |
|
| Q |
101 |
ggaagttgtatttctttgatttatatattattgctaatatttctttcttgctagtttcttatgaccatgatatgtgatggtagttatcatttttaaattt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2743281 |
ggaagttgtatttctttgatttatatattattgctaacatttctttcttgctagtttcttatgaccatgatatgtgacggtagttatcatttttaaattt |
2743182 |
T |
|
| Q |
201 |
acatatatttcataaatatatgcatattaatagccaaaaatggatagctttaataaccttacgaacatattgttgagtaagacttgtattaactgataag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2743181 |
acatatatttcataaatatatgcatattaatagccaaaaatggatagctttaataaccttacgaacatattgttgagtaagacttgtattaactgataag |
2743082 |
T |
|
| Q |
301 |
tggaagacgctcgagcatgcgattcatgatactctgtaatcgtaagtattgcataatcaataaactacggcattcgccctctgctatcagagacgtaggc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2743081 |
tggaagacgctcgagcatgcgattcatgatactctgtaatcataagtattgcataatcaataaactacggcatttgccctctgctatcagagacgtaggc |
2742982 |
T |
|
| Q |
401 |
atagttagccgaactacataatcaatcatctgtg |
434 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
2742981 |
atagttagccgaactacgtaatcaatcatctgtg |
2742948 |
T |
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