View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0892_high_3 (Length: 367)

Name: NF0892_high_3
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0892_high_3
NF0892_high_3
[»] chr4 (8 HSPs)
chr4 (3-281)||(37257067-37257357)
chr4 (141-281)||(37237611-37237751)
chr4 (211-279)||(37244886-37244954)
chr4 (108-276)||(37252947-37253106)
chr4 (211-281)||(37232696-37232766)
chr4 (56-120)||(37253136-37253200)
chr4 (141-193)||(37232772-37232824)
chr4 (56-104)||(37237812-37237860)
[»] chr6 (4 HSPs)
chr6 (211-281)||(14316691-14316761)
chr6 (211-281)||(14253963-14254033)
chr6 (210-281)||(14248153-14248224)
chr6 (128-189)||(14351662-14351723)
[»] scaffold0902 (1 HSPs)
scaffold0902 (213-281)||(3209-3277)
[»] scaffold1176 (2 HSPs)
scaffold1176 (143-281)||(303-441)
scaffold1176 (141-189)||(124-172)
[»] scaffold1652 (1 HSPs)
scaffold1652 (216-281)||(595-660)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 37257357 - 37257067
Alignment:
Q  3 catctccaacaatatcacccgttgccactccacccaaatcctctcaggcaccatctccttcagctgtctcaccggtggcatctcctcccatacctgtgaa 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37257357 catctccaaccatatcacccgttgccactccacccaaatcctctcaggcaccatctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaa 37257258  T
Q  103 gaacgctccttctccttcc------------tctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacct 190  Q
    |||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257257 gaacgctccttctccttcccctcctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacct 37257158  T
Q  191 tcaccttcagacaactccaccgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37257157 tcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt 37257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 37237751 - 37237611
Alignment:
Q  141 ctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccaccgccgcttttaacatattcaccgttgccgg 240  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||| || |||| ||||||| ||||||     
T  37237751 ctcctgctgttactccatcatccatctctactcctccttctgaagcaccttcaccttctgataactccatcgccgcattgaacagattcacctttgccgt 37237652  T
Q  241 atctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    ||||||||||| | | ||||| || || |||||||||||||    
T  37237651 atctgctgctgctgttgtttttgctgcagctttgatgatgt 37237611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 37244954 - 37244886
Alignment:
Q  211 cgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgat 279  Q
    ||||||||| |||| |||||| ||||||||||||||||||||| |||||||||| |||| |||||||||    
T  37244954 cgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgat 37244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 276
Target Start/End: Complemental strand, 37253106 - 37252947
Alignment:
Q  108 ctccttctccttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactc 207  Q
    ||||| || |||| || |||||||||||||| ||||||||| |||||||||||||||| || ||| ||||||| |||| ||||||       || |||      
T  37253106 ctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatttccactcctccttccgaaggaccttcc------gaaaacgg 37253013  T
Q  208 caccgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgat 276  Q
        |||||||| |||| ||| |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  37253012 t---gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat 37252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 37232766 - 37232696
Alignment:
Q  211 cgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    ||||||||| || | |||||||||||||||||||||||||||| || ||||||| || |||||||||||||    
T  37232766 cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgt 37232696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 37253200 - 37253136
Alignment:
Q  56 tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctccttctccttc 120  Q
    ||||| || |||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  37253200 tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttc 37253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 37232824 - 37232772
Alignment:
Q  141 ctcctgctgttactccatcatccatctctactactccttctgaagcaccttca 193  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||||||| |||    
T  37232824 ctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca 37232772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
Q  56 tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaaga 104  Q
    ||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  37237860 tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga 37237812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 14316761 - 14316691
Alignment:
Q  211 cgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    ||||||||| |||| ||| ||| |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  14316761 cgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14316691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 14254033 - 14253963
Alignment:
Q  211 cgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    ||||||||| |||| ||| || ||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  14254033 cgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 14248224 - 14248153
Alignment:
Q  210 ccgccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    |||||||||| |||| ||| || |||||||||||| |||||||  ||||||| |  ||||||||||||||||    
T  14248224 ccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgt 14248153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 14351723 - 14351662
Alignment:
Q  128 tctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacc 189  Q
    |||||||||||  ||||||||||||||||||||||  |||||||| | || ||| |||||||    
T  14351723 tctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcacc 14351662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 3277 - 3209
Alignment:
Q  213 ccgcttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    ||||||| |||| ||| || ||||||||||||||||||||  |||||||| | ||||||||||||||||    
T  3277 ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgt 3209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 303 - 441
Alignment:
Q  143 cctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccaccgccgcttttaacatattcaccgttgccggat 242  Q
    |||||| |||||||||| |||||||||||  |||| ||| ||||||| ||| | ||    |||  | |||||||||| |||| ||| || ||||||||||    
T  303 cctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgctttgaacagatttacagttgccggat 402  T
Q  243 ctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    || |||||||  ||||||||   ||||||||||||||||    
T  403 ctactgctgtcgtggttttcattgctgctttgatgatgt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 124 - 172
Alignment:
Q  141 ctcctgctgttactccatcatccatctctactactccttctgaagcacc 189  Q
    |||||||||| ||||||||||| ||||||||| |||| ||| |||||||    
T  124 ctcctgctgtgactccatcatcgatctctactcctccatctcaagcacc 172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 595 - 660
Alignment:
Q  216 cttttaacatattcaccgttgccggatctgctgctgttatggttttcgccgctgctttgatgatgt 281  Q
    |||| |||| ||| || ||||||||||||||||||||  |||||||| | ||||||||||||||||    
T  595 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 56 times since January 2019
Visitors: 6700