View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0892_high_4 (Length: 338)
Name: NF0892_high_4
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0892_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 63 - 328
Target Start/End: Original strand, 12514093 - 12514355
Alignment:
| Q |
63 |
gaaactataatatttataagnnnnnnnaggccatacttacggttattaaaatcacatatatatagctgttaatacatgaattttgttttactgaacaagt |
162 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514093 |
gaaactataatatttataagtttttttaggccatacttacggttattaaaatcacatatatatagctgttaatacatgaattttgttttactgaacaagt |
12514192 |
T |
|
| Q |
163 |
gtatggaatcgtgatagtgctctttcctcctaactaaatttgttttatacaactaaaaaattaaacttattggcctacacacttaactagcaaagtccaa |
262 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514193 |
gtagtgaatcgtgatagtgctctttcct---aactaaatttgttttatacaactaaaaaattaaacttattggcctacacacttaactagcaaagtccaa |
12514289 |
T |
|
| Q |
263 |
caactctttctcaatgcaatttaatgcagaaggcaaagagagagacctttgtgagagttttctctg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514290 |
caactctttctcaatgcaatttaatgcagaaggcaaagagagagacctttgtgagagttttctctg |
12514355 |
T |
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