View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0892_high_5 (Length: 337)
Name: NF0892_high_5
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0892_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 50792223 - 50792462
Alignment:
| Q |
1 |
tgcatggaagttggtaaagctatatagtgttactgctgccttataatcttaacatatcaatcaaggtgtatagtttatttattttatagtttcaagtgga |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50792223 |
tgcatggaagttggtaaagctatatagggttactgctgctttataatattaacatatcaatcaaggtgtatagtttatttattttatagtttcaagtgga |
50792322 |
T |
|
| Q |
101 |
tcaatatatgtaattaaaaggagccccaaagaattaaaaaattagtcccaatcatcgttttctttgttggcttctattctgttgtcattcttttagacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50792323 |
tcaatatatgtaattaaaaggagccccaaagaattaaaaaattagtcccaatcatcgttttctttgttggcttctattctgttgtcattcttttagacaa |
50792422 |
T |
|
| Q |
201 |
agatccaaagtacaagaaaccaaatagaaaatcttaaagt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
50792423 |
agatccaaagtacaagaaaccaaatagaaaatcttaaagt |
50792462 |
T |
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