View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0892_low_10 (Length: 289)

Name: NF0892_low_10
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0892_low_10
NF0892_low_10
[»] chr7 (5 HSPs)
chr7 (1-203)||(9299787-9299989)
chr7 (1-203)||(9304336-9304538)
chr7 (8-139)||(9296355-9296484)
chr7 (1-139)||(9286563-9286699)
chr7 (169-203)||(9247075-9247109)
[»] scaffold0653 (2 HSPs)
scaffold0653 (1-139)||(1618-1754)
scaffold0653 (169-203)||(6779-6813)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9299989 - 9299787
Alignment:
Q  1 attttcgttttgctttccatctgaagtaattgtctgaattcttatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 100  Q
    |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299989 attttcgttttggtttccatcagaagtaattgtctgaattctgatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 9299890  T
Q  101 aacaagacaccacaagtgaacctgatgaatccacacaacnnnnnnnngtagtattatgttgttttgacttggtaattcgtcgatttgattaatttgatga 200  Q
     ||||||||||||||||||||||||||| ||||||||||        |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9299889 gacaagacaccacaagtgaacctgatgagtccacacaacttttttttgtagtattatgtcgttttgacttggtaattcgtcgatttgatgaatttgatga 9299790  T
Q  201 tgt 203  Q
    |||    
T  9299789 tgt 9299787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9304538 - 9304336
Alignment:
Q  1 attttcgttttgctttccatctgaagtaattgtctgaattcttatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 100  Q
    |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9304538 attttcgttttggtttccatcagaagtaattgtctgaattctgatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 9304439  T
Q  101 aacaagacaccacaagtgaacctgatgaatccacacaacnnnnnnnngtagtattatgttgttttgacttggtaattcgtcgatttgattaatttgatga 200  Q
     ||||||||||||||||||||||||||| ||||||||||        |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9304438 gacaagacaccacaagtgaacctgatgagtccacacaacttttttttgtagtattatgtcgttttgacttggtaattcgtcgatttgatgaatttgatga 9304339  T
Q  201 tgt 203  Q
    |||    
T  9304338 tgt 9304336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 9296484 - 9296355
Alignment:
Q  8 ttttgctttccatctgaagtaattgtctgaattcttatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacataacaaga 107  Q
    |||||||||||||| ||||||||| |  |||  || ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  9296484 ttttgctttccatcagaagtaattat--gaaacctgatggtagtaattgaatgtatgaaggatctacctcactcattattgatgaatcaacaggacaaga 9296387  T
Q  108 caccacaagtgaacctgatgaatccacacaac 139  Q
    ||||||||||||||||||||||||||||||||    
T  9296386 caccacaagtgaacctgatgaatccacacaac 9296355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 9286699 - 9286563
Alignment:
Q  1 attttcgttttgctttccatctgaagtaattgtctgaattcttatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 100  Q
    |||||| |||||||||||||| ||||||||| |  |||  || ||||||| || |||||||||||||||||| || ||||||||||||||||||||| |     
T  9286699 attttcattttgctttccatcagaagtaattat--gaaacctgatggtagtaattgaatgtatgaaggatctgcctcactcattattgatgaatcaatag 9286602  T
Q  101 aacaagacaccacaagtgaacctgatgaatccacacaac 139  Q
     ||||||||||||||||||||||||||| ||||||||||    
T  9286601 gacaagacaccacaagtgaacctgatgagtccacacaac 9286563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 9247109 - 9247075
Alignment:
Q  169 ttggtaattcgtcgatttgattaatttgatgatgt 203  Q
    |||||| ||||||||||||||||||||||||||||    
T  9247109 ttggtacttcgtcgatttgattaatttgatgatgt 9247075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1618 - 1754
Alignment:
Q  1 attttcgttttgctttccatctgaagtaattgtctgaattcttatggtaggaactgaatgtatgaaggatctaccacactcattattgatgaatcaacat 100  Q
    |||||| |||||||||||||| ||||||||| |  |||  || ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||     
T  1618 attttcattttgctttccatcagaagtaattat--gaaacctgatggtagtaattgaatgtatgaaggatctacctcactcattattgatgaatcaacag 1715  T
Q  101 aacaagacaccacaagtgaacctgatgaatccacacaac 139  Q
     ||||||||||||||||||||||||||||||||||||||    
T  1716 gacaagacaccacaagtgaacctgatgaatccacacaac 1754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 6779 - 6813
Alignment:
Q  169 ttggtaattcgtcgatttgattaatttgatgatgt 203  Q
    |||||| ||||||||||||||||||||||||||||    
T  6779 ttggtacttcgtcgatttgattaatttgatgatgt 6813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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