View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0892_low_4 (Length: 413)
Name: NF0892_low_4
Description: NF0892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0892_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 11890862 - 11890656
Alignment:
| Q |
14 |
ctgttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacct |
113 |
Q |
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| T |
11890862 |
ctgttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacct |
11890763 |
T |
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| Q |
114 |
taaaactcatcaaatcctccttggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaacaaccaatcata |
213 |
Q |
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| T |
11890762 |
t-aaactcatcaaatcctcctcggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaataaccaatcata |
11890664 |
T |
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| Q |
214 |
gtttattg |
221 |
Q |
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|||||||| |
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| T |
11890663 |
gtttattg |
11890656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 11903206 - 11903000
Alignment:
| Q |
14 |
ctgttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903206 |
ctgttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacct |
11903107 |
T |
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| Q |
114 |
taaaactcatcaaatcctccttggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaacaaccaatcata |
213 |
Q |
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| T |
11903106 |
t-aaactcatcaaatcctcctcggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaataaccaatcata |
11903008 |
T |
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| Q |
214 |
gtttattg |
221 |
Q |
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|||||||| |
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| T |
11903007 |
gtttattg |
11903000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 11890554 - 11890393
Alignment:
| Q |
244 |
aaattattaaacttcttttggttcaaaataaaactaaagtttcaactctggattgcagttttgagaccaaggataaattaagagtaagaatcactgattc |
343 |
Q |
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|||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11890554 |
aaattattaaactttttttggttcaaaataagactaaattttcaactctgaattgcagttttgaggccaaggataaattaagagtaagaatcactgattc |
11890455 |
T |
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| Q |
344 |
aaataatcaaagatgggaaattccacaagaattgattccaagagactcatcatcttcatctc |
405 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11890454 |
aaataatcaaagatgggaagttccagaagaattgattccaagagactcatcatcttcatctc |
11890393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 11902898 - 11902737
Alignment:
| Q |
244 |
aaattattaaacttcttttggttcaaaataaaactaaagtttcaactctggattgcagttttgagaccaaggataaattaagagtaagaatcactgattc |
343 |
Q |
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|||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11902898 |
aaattattaaactttttttggttcaaaataagactaaattttcaactctgaattgcagttttgaggccaaggataaattaagagtaagaatcactgattc |
11902799 |
T |
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| Q |
344 |
aaataatcaaagatgggaaattccacaagaattgattccaagagactcatcatcttcatctc |
405 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11902798 |
aaataatcaaagatgggaagttccagaagaattgattccaagagactcatcatcttcatctc |
11902737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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