View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0893_low_1 (Length: 386)

Name: NF0893_low_1
Description: NF0893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0893_low_1
NF0893_low_1
[»] chr2 (12 HSPs)
chr2 (147-365)||(31612911-31613129)
chr2 (275-365)||(31608375-31608465)
chr2 (237-300)||(31605315-31605378)
chr2 (237-365)||(31623784-31623912)
chr2 (237-313)||(31608574-31608647)
chr2 (237-295)||(31619231-31619289)
chr2 (237-364)||(31623932-31624059)
chr2 (87-121)||(31619297-31619331)
chr2 (267-316)||(31605227-31605276)
chr2 (87-120)||(31613156-31613189)
chr2 (154-186)||(31619235-31619267)
chr2 (87-121)||(31608652-31608686)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 147 - 365
Target Start/End: Complemental strand, 31613129 - 31612911
Alignment:
Q  147 ttgctgctggaaagaaaccaatgggtagcacaggaagcgggggattggggcatgaaccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 246  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31613129 ttgctgctggaaagaaaccgatgggtagcacaggaagcggaggattggggcatgatccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 31613030  T
Q  247 aacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 346  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31613029 aacaaaagttaatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 31612930  T
Q  347 aaaaattctgatgatgatg 365  Q
    |||||||||||||||||||    
T  31612929 aaaaattctgatgatgatg 31612911  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 31608465 - 31608375
Alignment:
Q  275 ggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatg 365  Q
    |||||||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||    
T  31608465 ggtagcacaggaagcgaaggtttggggactgatccgcaaatggagaatcctcagctaccaacaaatccaccaaaaaattctgatgatgatg 31608375  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 31605378 - 31605315
Alignment:
Q  237 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggg 300  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  31605378 acaaaaacaaaacaaaagttgatcgaaagaaaccaataggtagcacaggaggcggaggattggg 31605315  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 31623912 - 31623784
Alignment:
Q  237 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 336  Q
    |||||| |||||| ||||||  || || |||||||  ||||||||||||  | |||||||||||||||| ||| || ||| ||| | |   ||||||||     
T  31623912 acaaaaccaaaaccaaagttggtcgaaggaaaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaa 31623813  T
Q  337 aaatccaccaaaaaattctgatgatgatg 365  Q
    ||||||||||||| |||||||||||||||    
T  31623812 aaatccaccaaaagattctgatgatgatg 31623784  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 31608647 - 31608574
Alignment:
Q  237 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaa 313  Q
    |||||||||||||||||||| || ||| ||||||||||| |||  |||||   ||||||||||||||||||||||||    
T  31608647 acaaaaacaaaacaaaagtttatgcaatgaaaccaatagttagaccagga---ggaggattggggactgatccgcaa 31608574  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 31619289 - 31619231
Alignment:
Q  237 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggagga 295  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||||||||||||||    
T  31619289 acaaaaacaaaacaaaagttgttggaaagaaaccaatgggtagcacaggaagcggagga 31619231  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 31624059 - 31623932
Alignment:
Q  237 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 336  Q
    ||||||||||||||||||||  |  |||||||||||  ||||| | ||||||  ||||||||||||||| |||  ||||| | ||| ||| |  |  |||    
T  31624059 acaaaaacaaaacaaaagttgttggaaagaaaccaacgggtaggaaaggaagaagaggattggggactggtccaaaaacggagaatgctcagggaataac 31623960  T
Q  337 aaatccaccaaaaaattctgatgatgat 364  Q
    || ||||||||||| |||||||||||||    
T  31623959 aattccaccaaaaacttctgatgatgat 31623932  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 31619331 - 31619297
Alignment:
Q  87 atatttgttgttaatttctcttcagaaaatgtgct 121  Q
    |||||||||||||||||||||||||||||||||||    
T  31619331 atatttgttgttaatttctcttcagaaaatgtgct 31619297  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 31605276 - 31605227
Alignment:
Q  267 aaccaataggtagcacaggaagcggaggattggggactgatccgcaaacg 316  Q
    ||||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  31605276 aaccaatgggtagcacaggaagcggaggaaaggggactgatgcgcaaacg 31605227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 31613189 - 31613156
Alignment:
Q  87 atatttgttgttaatttctcttcagaaaatgtgc 120  Q
    ||||||||||||||||||||||||||||||||||    
T  31613189 atatttgttgttaatttctcttcagaaaatgtgc 31613156  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 31619267 - 31619235
Alignment:
Q  154 tggaaagaaaccaatgggtagcacaggaagcgg 186  Q
    |||||||||||||||||||||||||||||||||    
T  31619267 tggaaagaaaccaatgggtagcacaggaagcgg 31619235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 31608686 - 31608652
Alignment:
Q  87 atatttgttgttaatttctcttcagaaaatgtgct 121  Q
    |||||| ||||||||||||||||||||||||||||    
T  31608686 atatttattgttaatttctcttcagaaaatgtgct 31608652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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