View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0893_low_11 (Length: 256)

Name: NF0893_low_11
Description: NF0893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0893_low_11
NF0893_low_11
[»] chr5 (9 HSPs)
chr5 (1-234)||(28340930-28341162)
chr5 (21-187)||(38443287-38443452)
chr5 (19-187)||(38182731-38182898)
chr5 (19-187)||(38185491-38185658)
chr5 (19-187)||(38188233-38188400)
chr5 (19-187)||(38209957-38210124)
chr5 (19-187)||(38212699-38212866)
chr5 (19-187)||(38215458-38215625)
chr5 (21-187)||(38453043-38453208)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28341162 - 28340930
Alignment:
Q  1 cggctgctttggagaagcgcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341162 cggctgctttggagaagcgcgacacatacgatcatactcgaccatcatatt-ttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttc 28341064  T
Q  101 acaagggagctggtacttgaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatcaaccatgataatt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341063 accagggagctggtacttgaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatcaaccatgataatt 28340964  T
Q  201 ttggtggttccgccaatgtaccaaaaatgatgat 234  Q
    ||||||||||| ||||||||||||||||||||||    
T  28340963 ttggtggttccaccaatgtaccaaaaatgatgat 28340930  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 38443452 - 38443287
Alignment:
Q  21 gacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtacttga 120  Q
    ||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| ||| || |||||||| | |||| || |||||||    
T  38443452 gacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatcaaaatcttcaccaaggagttgatacttga 38443354  T
Q  121 agcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||| |||  | || ||||  ||| ||||||||| | | |||||||||||| ||||||||||||||    
T  38443353 agcaaacattggaaaccatgaatgaggaaagctttgccatgaggtcggagaagttgatattacgatc 38443287  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 38182731 - 38182898
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | | || || |||||    
T  38182731 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatactt 38182829  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38182830 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38182898  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 38185658 - 38185491
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | | || || |||||    
T  38185658 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatactt 38185560  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38185559 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 38188400 - 38188233
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | | || || |||||    
T  38188400 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatactt 38188302  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38188301 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38188233  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 38209957 - 38210124
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | | || || |||||    
T  38209957 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatactt 38210055  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38210056 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38210124  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 38212699 - 38212866
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | | || || |||||    
T  38212699 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatactt 38212797  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38212798 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38212866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 38215625 - 38215458
Alignment:
Q  19 gcgacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtactt 118  Q
    ||||||||||||||||||||||| ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | |||| || |||||    
T  38215625 gcgacacatacgatcatactcgaacatcatatgatt-gagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaaggagttgatactt 38215527  T
Q  119 gaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||| ||| |||| | |||||||   |  ||||||||| | | |||||| ||||| ||||||||||||||    
T  38215526 gaaacaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatc 38215458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 38453043 - 38453208
Alignment:
Q  21 gacacatacgatcatactcgaccatcatattcttcgagatcatcatcgttgtgaacggagatcaaatcattaagatcttcacaagggagctggtacttga 120  Q
    |||||||| |||||||||| | ||||||||  || |||||| || ||||| | ||| | ||||||| |||  | |||||||| | |||| || |||||||    
T  38453043 gacacatatgatcatactctaacatcatatgatt-gagatcttcttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttga 38453141  T
Q  121 agcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattacgatc 187  Q
    ||||| |||| | |||||||  |   ||||||||| | | |||||||||||| ||||||||||||||    
T  38453142 agcaaacatcggaaaacatgaatatggaaagctttgccatgaggtcggagaagttgatattacgatc 38453208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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