View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0893_low_12 (Length: 238)

Name: NF0893_low_12
Description: NF0893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0893_low_12
NF0893_low_12
[»] chr8 (2 HSPs)
chr8 (1-223)||(23132510-23132732)
chr8 (67-216)||(26587231-26587380)
[»] chr3 (4 HSPs)
chr3 (1-223)||(11897148-11897370)
chr3 (1-224)||(26432623-26432846)
chr3 (67-151)||(23424570-23424654)
chr3 (109-158)||(49149802-49149851)
[»] chr1 (4 HSPs)
chr1 (1-223)||(20284849-20285071)
chr1 (58-225)||(50236550-50236717)
chr1 (70-151)||(50451967-50452048)
chr1 (109-167)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (1-223)||(14653605-14653827)
chr2 (70-216)||(26791325-26791471)
chr2 (13-146)||(35135159-35135292)
chr2 (13-146)||(40328252-40328385)
chr2 (58-167)||(16322502-16322611)
chr2 (73-146)||(3779048-3779121)
chr2 (70-146)||(573266-573342)
chr2 (65-151)||(42403209-42403295)
chr2 (70-215)||(177504-177649)
chr2 (85-146)||(19265490-19265551)
chr2 (70-121)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (55-160)||(75967-76072)
[»] chr5 (3 HSPs)
chr5 (70-176)||(32874457-32874563)
chr5 (70-224)||(7817131-7817285)
chr5 (65-167)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (73-224)||(54477407-54477558)
chr4 (67-170)||(46784469-46784572)
chr4 (70-151)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (67-167)||(24990660-24990760)
chr6 (67-224)||(24893833-24893990)
chr6 (54-167)||(13599639-13599752)
chr6 (70-177)||(27852952-27853059)
[»] chr7 (4 HSPs)
chr7 (54-167)||(16769946-16770059)
chr7 (54-167)||(27781614-27781727)
chr7 (73-143)||(1353794-1353864)
chr7 (70-215)||(1579159-1579304)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23132510 - 23132732
Alignment:
Q  1 ggcctcgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132510 ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 23132609  T
Q  101 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132610 gggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 23132709  T
Q  201 catgatgagcttgatgatgatgt 223  Q
    |||||||| ||||||| ||||||    
T  23132710 catgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 26587380 - 26587231
Alignment:
Q  67 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 166  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  167 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 216  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| ||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatg 26587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11897370 - 11897148
Alignment:
Q  1 ggcctcgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11897370 ggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagcttttccatgcaaaggatgaaaagataag 11897271  T
Q  101 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897270 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 11897171  T
Q  201 catgatgagcttgatgatgatgt 223  Q
    |||||||||||||||| ||||||    
T  11897170 catgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26432623 - 26432846
Alignment:
Q  1 ggcctcgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 100  Q
    |||| |||||| |||||||| || ||| ||||||||||||||| ||| || |||||||||||||| || |||||||||||||||| |||||| |||||||    
T  26432623 ggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgcaaatgatgaagagataag 26432722  T
Q  101 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 200  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||  | |  ||||  || |||||    
T  26432723 gggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagagtagtttgatgaagagacacaatg 26432822  T
Q  201 catgatgagcttgatgatgatgtc 224  Q
    ||||||||| |||||| |||||||    
T  26432823 catgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  67 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 151  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
Q  109 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 158  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149802 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20285071 - 20284849
Alignment:
Q  1 ggcctcgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285071 ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 20284972  T
Q  101 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 200  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  20284971 gggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagagtaactaggagaagctacgcaatg 20284872  T
Q  201 catgatgagcttgatgatgatgt 223  Q
    |||||||||||||||| ||||||    
T  20284871 catgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  58 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 157  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  158 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtcc 225  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| || ||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 151  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  109 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 167  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||| || |||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14653605 - 14653827
Alignment:
Q  1 ggcctcgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| |||||    
T  14653605 ggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagcttttccatgcaaaggatgaaaaaataag 14653704  T
Q  101 gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  14653705 gggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg 14653804  T
Q  201 catgatgagcttgatgatgatgt 223  Q
    |||||||||||||||| ||||||    
T  14653805 catgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 26791471 - 26791325
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  170 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 216  Q
    | |||||| | || |  ||||  ||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatg 26791325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 35135159 - 35135292
Alignment:
Q  13 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 112  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  113 caccttgtcggaggccatgagaaggcttgaaagg 146  Q
    ||||||| || || ||||||| ||||||||||||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 40328385 - 40328252
Alignment:
Q  13 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 112  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  113 caccttgtcggaggccatgagaaggcttgaaagg 146  Q
    ||||||| || || ||||||| ||||||||||||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  58 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 157  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  158 tcccgttcca 167  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  73 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 146  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 146  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  65 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 151  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||||| |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  170 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 215  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  85 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 146  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 121  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  55 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaact 154  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  155 tgttcc 160  Q
    ||||||    
T  75972 tgttcc 75967  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  170 gtataga 176  Q
    | |||||    
T  32874557 ggataga 32874563  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  170 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 224  Q
      ||||||||  | |  || | ||| ||||||||||||||||||||  |||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 6641008 - 6641110
Alignment:
Q  65 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt 164  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| ||||||||||||||  ||||||||||| | ||  ||||| |||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt 6641107  T
Q  165 cca 167  Q
    |||    
T  6641108 cca 6641110  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  73 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 172  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  173 tagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 224  Q
    || ||||  | |  || |  || ||||||||||||||||||||| |||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
Q  67 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 166  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||||| ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  167 aaag 170  Q
    ||||    
T  46784569 aaag 46784572  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 151  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  67 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 166  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  167 a 167  Q
    |    
T  24990760 a 24990760  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  67 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 166  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  167 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatgatgatgtc 224  Q
    | | ||| ||| ||   |||| || | || ||||||||||||||||||||| |||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  54 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 153  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||||| |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  154 ttgttcccgttcca 167  Q
    ||||| || |||||    
T  13599652 ttgttaccattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || |||||||||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  170 gtatagag 177  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 16769946 - 16770059
Alignment:
Q  54 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 153  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||||| ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  154 ttgttcccgttcca 167  Q
    ||||| || |||||    
T  16770046 ttgttaccattcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 27781614 - 27781727
Alignment:
Q  54 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 153  Q
    |||||||||| |  ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| |||||||||||  ||||| || || ||||      
T  27781614 gttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcatt 27781713  T
Q  154 ttgttcccgttcca 167  Q
    ||||||||||||||    
T  27781714 ttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
Q  73 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa 143  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||||| |||||||||    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa 1353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  70 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 169  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  170 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 215  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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