View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0893_low_4 (Length: 318)
Name: NF0893_low_4
Description: NF0893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0893_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49817222 - 49817001
Alignment:
| Q |
1 |
cgatttcgttttctccatcaccaattgtttttctcagcaattttcttcagctgatgaacttttctccgatggaaaaatagttccaatggaaatnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49817222 |
cgatttcgttttctccatcaccaattgtttttctcagcaattctcttcagctgatgaacttttctccgatggaaaaatagttccaatggaaataaaaaaa |
49817123 |
T |
|
| Q |
101 |
gttatctccaatggaattatcgttccaataaagaaaaattcatcagctaatgaactctttgagcctcttcaaaaaactacagtaatgaagaagaggctta |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49817122 |
gttatctccaatggaattatcgttccaatgaagaaaaattcatcagctaatgaattctttgagcctcttcaaaaaactacagtaatgaagaagaggctta |
49817023 |
T |
|
| Q |
201 |
aagaatttctgtctgatgaaac |
222 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
49817022 |
aagaattcctgtctgatgaaac |
49817001 |
T |
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