View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0893_low_7 (Length: 284)
Name: NF0893_low_7
Description: NF0893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0893_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 7601918 - 7602124
Alignment:
| Q |
36 |
agtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcgaaatgatataaatttataattggttttgttgacgagtgtttttg |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7601918 |
agtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcggaatgatataaatttataattggttttgttaacgagtgtttttg |
7602017 |
T |
|
| Q |
136 |
aaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacattttacctatgttattgttttctttacga |
235 |
Q |
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| T |
7602018 |
agacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaatacattttacctatgttattgttttctttacga |
7602117 |
T |
|
| Q |
236 |
tgatgat |
242 |
Q |
| |
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||||||| |
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| T |
7602118 |
tgatgat |
7602124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 34898932 - 34898991
Alignment:
| Q |
139 |
cactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
198 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||| || | || || ||||||||||| |
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| T |
34898932 |
cactctttaaggatcttcaatttaaaaattattttttcaaaaagtcaattattacaaatt |
34898991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 167956 - 167916
Alignment:
| Q |
138 |
acactctttaagtatcttcaatttaaaaattattcttttaa |
178 |
Q |
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| T |
167956 |
acactctttaagtatctcaaatttaaaaattattcttttaa |
167916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 44592839 - 44592917
Alignment:
| Q |
117 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
195 |
Q |
| |
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||||| |||||||||| || |||||||||||| ||| ||||||| |||||||||||||| | ||||| |||||||| |
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| T |
44592839 |
ttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaa |
44592917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 11721011 - 11720933
Alignment:
| Q |
117 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
195 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| ||| | ||||||| |||||||||||||||| || || |||||||| |
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| T |
11721011 |
ttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaa |
11720933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 15458417 - 15458485
Alignment:
| Q |
140 |
actctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacatt |
208 |
Q |
| |
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||||||||| |||| ||||||||||| |||||||| || | ||||||| |||||||||| || ||||| |
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|
| T |
15458417 |
actctttaaagatctccaatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacatt |
15458485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 47308609 - 47308526
Alignment:
| Q |
114 |
gttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
198 |
Q |
| |
|
|||||| | |||||||| || |||||||||||||| |||| |||||| ||||||||| || || || |||||||||||||||| |
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| T |
47308609 |
gttttgctaacgagtgtcttcgaaacactctttaaaaatctaaaatttataaattattccttcaaaac-ttaaatattacaaatt |
47308526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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