View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0894_high_1 (Length: 473)
Name: NF0894_high_1
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0894_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 38717241 - 38717674
Alignment:
| Q |
11 |
cagagatgtcgcagcgtcttgttgatgcagctcatcgcggtgacacggattctgccattgaatgtttagcgaatccattggtcgatgttaacttcattgg |
110 |
Q |
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| T |
38717241 |
cagagatgtcgcagcgtcttgttgatgcagctcatcgtggtgacacggattctgccattgaatgtttagcgaatccattggtggatgttaacttcattgg |
38717340 |
T |
|
| Q |
111 |
aacggtcatgttgaagtccaaaacaatggagatcgtgcttcaagatgagtcacctcatcgagtaaattcagtgtatgaagagttcaaaatcgaggtcact |
210 |
Q |
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| T |
38717341 |
aacggtcatgttgaagtccaaaacaatggagatcgtgcttcaagatgagtcacctcatcgagtaaattcagtgtatgaagagttcaaaatcgaggtcact |
38717440 |
T |
|
| Q |
211 |
gctctgtttttggctgcacattctggaaatttgacattaattcgtaaactactggtatgcaactgttccgaatgttctgccttatattgtgtttacgaaa |
310 |
Q |
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| T |
38717441 |
gctctgtttttggctgcacattctggaaatttgacgttaattcgtaaactactggtatgcaaccgttccgaatgttctgccttatattgtgttttcgaaa |
38717540 |
T |
|
| Q |
311 |
attatgttgcttggacgttttgattatttgaaacgtgattttggccatgattaacattgttgtaatcaataatattcaatttgtgattgtgcttggtgat |
410 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38717541 |
attatgttccttggacgttttgattatttgaaacgtgattttggccatgattaacattgttgtaatcaataatattcaatttgtgattgtgcttggtgat |
38717640 |
T |
|
| Q |
411 |
tttgatttcatttgattacaaattacactttatc |
444 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
38717641 |
tttgatttcatttgattacaaattacgctttatc |
38717674 |
T |
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