View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0894_high_10 (Length: 251)
Name: NF0894_high_10
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0894_high_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 4367818 - 4368060
Alignment:
| Q |
9 |
agcagagaccacacccacttccaaccttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcag |
108 |
Q |
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| T |
4367818 |
agcagacaccacacccgcttccaaccttgcgaaccttctgcggaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcag |
4367917 |
T |
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| Q |
109 |
catcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcatgttcaaaatacaagattttaaagaaagataaacatttata |
208 |
Q |
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| T |
4367918 |
catcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcatgttcaaagtacaagagtttaaagaaagataaacatttata |
4368017 |
T |
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| Q |
209 |
caaaacagaaccaggatgcaggggaaaaaagaaacaatgattt |
251 |
Q |
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| T |
4368018 |
caaaacagaaccaggatgcaggggaaaaaagaaacaatgattt |
4368060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 4363407 - 4363500
Alignment:
| Q |
34 |
cttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcagcatcagaccaaacacacac |
127 |
Q |
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| T |
4363407 |
cttgcgaaccttctgccgaactgacatttgacagtaaccaagatgctaaactgatatacaaacttcctaattcagcatcaaaccaaacacacac |
4363500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 4358146 - 4358261
Alignment:
| Q |
106 |
cagcatcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcat---gttcaaaatacaagattttaaagaaagataaaca |
202 |
Q |
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| T |
4358146 |
cagcatcagaccaaaaatacacatccatatcgtct-----ggagaa-gaaaaatagctatcatcttgttcaaaatatcagagtttaaagaaagagaaaca |
4358239 |
T |
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| Q |
203 |
tttatacaaaacagaaccagga |
224 |
Q |
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| T |
4358240 |
ttcaaacaaaacagaaccagga |
4358261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 33807136 - 33807021
Alignment:
| Q |
34 |
cttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcagcatcagaccaaacaca--cacatcc |
131 |
Q |
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| T |
33807136 |
cttgtgaaccttctgctaaactgaaatttaacagaaag-aagatattgaactgataaacaaacctcgtaattcagcatcaaatcaaacacacacacattc |
33807038 |
T |
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| Q |
132 |
atatcttctccactgca |
148 |
Q |
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| T |
33807037 |
atatcttctccactgca |
33807021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 19094667 - 19094629
Alignment:
| Q |
110 |
atcagaccaaacacacacatccatatcttctccactgca |
148 |
Q |
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| T |
19094667 |
atcagaccaaacacacacattcatatcttctccactgca |
19094629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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