View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0894_low_1 (Length: 589)
Name: NF0894_low_1
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0894_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 39342962 - 39343464
Alignment:
| Q |
1 |
ttctatacatttagggacaaaatgtcaaaaaggaccggtccttctgtttctgcgaatggaaacagagaaattcagaaagtattaacatcaggaaatttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39342962 |
ttctatacatttagggacaaaatgtcaaaaaggaccggtccttctgtttctgtgaatggaaacagagaaattcagaaagtattaacatcaggaaatttct |
39343061 |
T |
|
| Q |
101 |
cacaaaaatgtcttggtcattccaatattgtaccattgtaggttaaatgaatacatataaaaaatggctgtcattttaagaaacacaacaacccctttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39343062 |
cacaaaaatgtcttggtcattccaatattgtaccattgtaggttaaatgaatacatataaaaaatggctgtcattttaagaaacacaacaacccctttga |
39343161 |
T |
|
| Q |
201 |
aatagaacagaagctgcctttggtgaagttttggccacagggttttgtagacagtgggacatgcttctcaactatcacttctttttggtcttttctcttc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39343162 |
aatagaacagaagctgcctttggtgaagttttggccacagggttttgtagacagtgggacatgcttctcaactatcacttctttttggtcttttctcttc |
39343261 |
T |
|
| Q |
301 |
ttgagtggtcaagatcattagtcaactaccataataattatgtcacaattagtcataacctatagatgttatactatactagtttgtcttaatatcattt |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39343262 |
ttgaatggtcaagatcattagtcaactaccataataattatgtcacaattagtcataacctatagatgttacactatactagtttgtcttaatatcattt |
39343361 |
T |
|
| Q |
401 |
tctatcatgtctgaaatgcaactatgatcgtttatagctttatgctggtacataattattttgttagaggatttagctaacctatttcattaagtgatga |
500 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39343362 |
tctatcatgtctgaaatgcaactatgatcgtttatagctttatgctggtacataattattttgttagaggatttagctaacctatttcattaagtaatga |
39343461 |
T |
|
| Q |
501 |
tgt |
503 |
Q |
| |
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||| |
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| T |
39343462 |
tgt |
39343464 |
T |
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