View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0894_low_11 (Length: 283)
Name: NF0894_low_11
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0894_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 14073412 - 14073576
Alignment:
| Q |
28 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14073412 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttcc-a |
14073510 |
T |
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| Q |
128 |
nnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattcttg |
193 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14073511 |
taaaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattcttg |
14073576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 14080889 - 14081051
Alignment:
| Q |
28 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
127 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14080889 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataa-tttcttcc-- |
14080985 |
T |
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| Q |
128 |
nnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattcttg |
193 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14080986 |
ataaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattcttg |
14081051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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