View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0894_low_4 (Length: 457)

Name: NF0894_low_4
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0894_low_4
NF0894_low_4
[»] chr6 (2 HSPs)
chr6 (183-409)||(2110562-2110806)
chr6 (146-200)||(2110827-2110881)
[»] chr2 (3 HSPs)
chr2 (145-255)||(28135115-28135225)
chr2 (10-96)||(28134860-28134946)
chr2 (119-147)||(28135001-28135029)
[»] chr8 (2 HSPs)
chr8 (145-255)||(44807947-44808057)
chr8 (10-96)||(44808214-44808300)
[»] chr3 (3 HSPs)
chr3 (145-255)||(2231417-2231526)
chr3 (10-95)||(2231697-2231782)
chr3 (119-147)||(2231609-2231637)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 183 - 409
Target Start/End: Complemental strand, 2110806 - 2110562
Alignment:
Q  183 aactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagacttcaatataac------------------gtggtacta 264  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                  |||||||||    
T  2110806 aactaaaattaaaggaatgaaaaaggaagggaagattttccggatatattctgcgcatagacttcaatataactataagatctcatttaacgtggtacta 2110707  T
Q  265 ttatcagaattgtaataagaaagaaaatatatcctattttctgtttttaatgtaaaaataaatgaagagacttgttgaacaagacactatggtaatttaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  2110706 ttatcagaattgtaataagaaagaaaatatatcctattttctgtttttaatgtaaaaacaaatgaagagacttgttgaacaagacactatggtaacttaa 2110607  T
Q  365 cgtggcagtattactggctacagtaaatcttatcctttaatatgc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2110606 cgtggcagtattactggctacagtaaatcttatcctttaatatgc 2110562  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 2110881 - 2110827
Alignment:
Q  146 ttaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaat 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2110881 ttaaaatcataaaaatttcaatggaatatagctcaataactaaaattaaaggaat 2110827  T

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Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 28135115 - 28135225
Alignment:
Q  145 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 244  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  28135115 attaaaatcataaaaatttcaatggaatatagctcaatatctaaaattaaagggatgaaaaaggaagggaagattttccggatatattctgcgtatagac 28135214  T
Q  245 ttcaatataac 255  Q
    |||||||||||    
T  28135215 ttcaatataac 28135225  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 28134860 - 28134946
Alignment:
Q  10 aagaatataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 96  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  28134860 aagaacatatgacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaagcaggcggagaacctgaaca 28134946  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 28135001 - 28135029
Alignment:
Q  119 tcttcataaatatttccagcacaaacatt 147  Q
    |||||||||||||||||||||||||||||    
T  28135001 tcttcataaatatttccagcacaaacatt 28135029  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 44808057 - 44807947
Alignment:
Q  145 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 244  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  44808057 attaaaatcataaaaatttcaattgaatatagctcaatgactaaaattaaagggatgaaaagggaagggaagattttccggatatattctgcgtatagac 44807958  T
Q  245 ttcaatataac 255  Q
    |||||||||||    
T  44807957 ttcaatataac 44807947  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 44808300 - 44808214
Alignment:
Q  10 aagaatataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 96  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44808300 aagaacataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagacggagaacctgaaca 44808214  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 2231526 - 2231417
Alignment:
Q  145 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 244  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  2231526 attaaaatcataaaaatt-caatggaatatagctcaataactaaaattaaagggatgaaaaaggaagggaagattttccggatatattcagcgtatagac 2231428  T
Q  245 ttcaatataac 255  Q
    |||||||||||    
T  2231427 ttcaatataac 2231417  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 2231782 - 2231697
Alignment:
Q  10 aagaatataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaac 95  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  2231782 aagaacataagacactgacaaatgctcagataatctggtgatggaagcttttgaaatactttaacaaggagacggagaacctgaac 2231697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 2231637 - 2231609
Alignment:
Q  119 tcttcataaatatttccagcacaaacatt 147  Q
    |||||||||||||||||||||||||||||    
T  2231637 tcttcataaatatttccagcacaaacatt 2231609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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