View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0894_low_5 (Length: 447)

Name: NF0894_low_5
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0894_low_5
NF0894_low_5
[»] chr1 (3 HSPs)
chr1 (70-439)||(43427152-43427524)
chr1 (19-68)||(43427045-43427094)
chr1 (362-406)||(4048507-4048551)
[»] chr7 (7 HSPs)
chr7 (70-430)||(31403504-31403867)
chr7 (74-432)||(42304899-42305259)
chr7 (70-430)||(3897949-3898306)
chr7 (104-430)||(3884099-3884431)
chr7 (19-71)||(31403397-31403449)
chr7 (23-70)||(3884506-3884553)
chr7 (19-68)||(3898363-3898412)
[»] chr2 (1 HSPs)
chr2 (146-424)||(17247168-17247449)
[»] chr3 (1 HSPs)
chr3 (319-391)||(19671160-19671235)
[»] chr6 (1 HSPs)
chr6 (268-350)||(11338503-11338585)
[»] chr4 (2 HSPs)
chr4 (360-430)||(55311249-55311319)
chr4 (385-445)||(55267126-55267186)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 70 - 439
Target Start/End: Original strand, 43427152 - 43427524
Alignment:
Q  70 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 169  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  43427152 aatgtggattgtgcactctttaacaacaacactactacgggtcttgacatgtgctttaaagactcctcaagggcgttgttgttaggcttttcaaagtatt 43427251  T
Q  170 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  43427252 cctatttcaattctactcctctagaagctgaagtgctagacttatttacggctataaacattgctattaattgtcacataccatctgttatctttgagtc 43427351  T
Q  270 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 366  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||   |||||||    
T  43427352 tgaccgtaagttatttgttgatactattaactccaactctactccaaacaatgagtttggagatattatttctagatgtaagaatctattgtcatctcgc 43427451  T
Q  367 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagagttaccttat 439  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43427452 aataattttattgtgagctatgtcaggaggcaaacaaatagggtagcttataacatagctagagttaccttat 43427524  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 43427045 - 43427094
Alignment:
Q  19 aaaattctcttcaagaatggatatatatgcaaaaagcaaggcaaccgagt 68  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  43427045 aaaattctcttcaagaatggatgtatatgcaaaatgcaaggcaaccgagt 43427094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 4048551 - 4048507
Alignment:
Q  362 ctcgcaataattttattgtgagctatgtcaggaggcaaacaaata 406  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||    
T  4048551 ctcgcaataattttattgttagttatgtcaggaggcaagcaaata 4048507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 70 - 430
Target Start/End: Original strand, 31403504 - 31403867
Alignment:
Q  70 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 169  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||| ||| | ||||| |||||||||  || |||||||||||||||| |  |||||||    
T  31403504 aatgtggattatgcactctttaacaacaacactattacgagtcttgccatatactttagagactcctctgggtcgttgttgttaggcttctcgaagtatt 31403603  T
Q  170 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 269  Q
    ||||||||||||||||| |||  |||||| |||   ||| |||||||  ||| |||||| ||| |||| |||| ||||| |||| |||||||||||||||    
T  31403604 cctatttcaattctactactccagaagctcaagcaataggcttatttgaggccataaacattgttattgattgccacatgccatctgttatctttgagtc 31403703  T
Q  270 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 366  Q
      |||| | |||| |||||||| ||||||||||||| ||||||||||||||||| ||  |||||||||| |||||||||||  |||||||   ||||| |    
T  31403704 caactgtaggttacttgttgatgctattaactccaaatctactccaaacaatgagttcagagatattatatctagatgtaaggatctattatcatctcac 31403803  T
Q  367 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 430  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||    
T  31403804 aataattttattgtgagctatgtcaggagacaaacaaatagggtagctcataacatagctagag 31403867  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 74 - 432
Target Start/End: Complemental strand, 42305259 - 42304899
Alignment:
Q  74 tggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtattccta 173  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| ||| ||||||| |||||||||| | ||||||||||||| ||| |  |||||||||||    
T  42305259 tggattgcgcactctttaataacaacactattacgggtcttggcatatgctttagagactcctccggagcgttgttgttagacttctcgaagtattccta 42305160  T
Q  174 tttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtctgac 273  Q
    ||||| ||||||||||   |||||||||||| ||| |||||||  |||||||||||||| ||||||| |||| ||  ||| |||||| ||| | | ||||    
T  42305159 tttcatttctactccttcagaagctgaagtgttaggcttatttgaggctataaacgttgttattaatcgtcaaatgacatctgttatatttaaatatgac 42305060  T
Q  274 tgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaata 370  Q
    || | |||| ||| |||||| ||||||||||||||||||||| | ||||| || |||||| |||||||||||||||   |||||||   ||||| |||||    
T  42305059 tgtaggttacttgctgatac-attaactccaactctactccacataatgagttcggagatgttatttctagatgtatggatctattgtcatctcacaata 42304961  T
Q  371 attttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagagtt 432  Q
    |||||||| |||||||||| |||||||||||||||| | ||  |||||||||||||||||||    
T  42304960 attttattttgagctatgtgaggaggcaaacaaataaggtatcttataacatagctagagtt 42304899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 70 - 430
Target Start/End: Complemental strand, 3898306 - 3897949
Alignment:
Q  70 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 169  Q
    ||||||||||||| ||| ||||| ||||||||||||||  |||||||||| | ||||||||||||| |  |||| | |||||||||||| | ||||||||    
T  3898306 aatgtggattgtgaactctttaataacaacactattacatgtcttgacatcttctttaaagactccgctggggcat-gttgttaggcttctaaaagtatt 3898208  T
Q  170 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 269  Q
    ||||||| |||| ||||||    | |||||||  | ||  |||||||  |||||||||| ||| |||||||||||| ||  ||| |||||||||||||||    
T  3898207 cctatttaaattttactccatcagtagctgaaacgttaagcttatttgaggctataaacattgttattaattgtcatatgacatttgttatctttgagtc 3898108  T
Q  270 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 366  Q
     ||||  | |||| ||||||  |||||||||||||||||||||||     |||| |||||||||||||||| |||||||||  |||||||   |||||      
T  3898107 cgactataggttacttgttggcactattaactccaactctactcc-----atgagtttggagatattatttatagatgtaaggatctattgtcatctcat 3898013  T
Q  367 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 430  Q
    |||||||||||||||||  ||||||| ||||||| ||||| | ||| | |||||||||||||||    
T  3898012 aataattttattgtgagtaatgtcagaaggcaaataaataaggtagctcataacatagctagag 3897949  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 104 - 430
Target Start/End: Complemental strand, 3884431 - 3884099
Alignment:
Q  104 ttacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtattcctatttcaattctactcctctgga--agctgaa 201  Q
    |||| ||| ||| ||| ||||||||||| |||||   |||||||||||||||||| | ||||||||| |||||||||||||||| | |  |  |||||||    
T  3884431 ttacaggttttggcatctgctttaaagaatcctctgaggcgttgttgttaggcttctcaaagtattcttatttcaattctactctttttcagtagctgaa 3884332  T
Q  202 gtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtctgactgcaagttatttgttgatactattaact 301  Q
     || ||  |||||||  |||||||||| ||| |||||||||||||||  ||| |||||| |  | ||| ||||| | |||| ||||||| ||||||||||    
T  3884331 atgttaagcttatttgaggctataaacattgatattaattgtcacatgacatctgttatatccgtgtccgactgtaggttacttgttgacactattaact 3884232  T
Q  302 ccaa-ctctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaataattttattgtgagctatgtcaggaggc 397  Q
     ||| |||||||||| | ||||| || |||||||||||||||||||||||  |||||||   ||||| ||||||||||||||||||  |||||||||| |    
T  3884231 tcaaactctactccacataatgagttcggagatattatttctagatgtaaggatctattgtcatctcacaataattttattgtgagtaatgtcaggagac 3884132  T
Q  398 aaacaaataggatagtttataacatagctagag 430  Q
    || |||||||||||| |  || |||||||||||    
T  3884131 aagcaaataggatagctcgtagcatagctagag 3884099  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31403397 - 31403449
Alignment:
Q  19 aaaattctcttcaagaatggatatatatgcaaaaagcaaggcaaccgagtcaa 71  Q
    |||||||||| ||||||||||| || |||||||||||||||||||||||||||    
T  31403397 aaaattctctccaagaatggatgtagatgcaaaaagcaaggcaaccgagtcaa 31403449  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 3884553 - 3884506
Alignment:
Q  23 ttctcttcaagaatggatatatatgcaaaaagcaaggcaaccgagtca 70  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  3884553 ttctctccaagaatggatgtatatgcaaaaagcaaggccaccgagtca 3884506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3898412 - 3898363
Alignment:
Q  19 aaaattctcttcaagaatggatatatatgcaaaaagcaaggcaaccgagt 68  Q
    |||||||||| |||||||||||  |||||||||||||||||| |||||||    
T  3898412 aaaattctctccaagaatggatgaatatgcaaaaagcaaggcgaccgagt 3898363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 146 - 424
Target Start/End: Original strand, 17247168 - 17247449
Alignment:
Q  146 tgttgttaggctttttaaagtattcctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtca 245  Q
    ||||||||||||| |  ||| |||| |||||  ||||||||||||  ||| | |||| | ||| |||||||  |||||||||| ||||||||||||||||    
T  17247168 tgttgttaggcttctcgaagcattcttattttcattctactcctccagaaccagaagcgttaggcttatttgaggctataaacattgctattaattgtca 17247267  T
Q  246 cataccatatgttatctttgagtctgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctaga 345  Q
    |||  ||| |||||||||||||||  |||| | |||| ||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||    
T  17247268 catgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactctacttcaaacaatgagttcggagatatcatttctaga 17247367  T
Q  346 tgtaaaaatctatt---atctcgcaataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatag 424  Q
    |||||  |||||||   |||||||||||||||||||||||  |||||||| ||||||||||||| | ||||| |||||||||    
T  17247368 tgtaaggatctattgtcatctcgcaataattttattgtgaattatgtcagaaggcaaacaaataaggtagttcataacatag 17247449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 19671160 - 19671235
Alignment:
Q  319 aatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaataattttattgtgagctatgtca 391  Q
    ||||| || |||||||| ||||||||||||||  |||||||   ||||||||||||||||||| ||||||||||||    
T  19671160 aatgagttcggagatatcatttctagatgtaaggatctattgtcatctcgcaataattttattatgagctatgtca 19671235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 11338585 - 11338503
Alignment:
Q  268 tctgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaa 350  Q
    ||||| ||||||||| |||||||| |||||| ||||| |||||||||    ||||| ||||||||||| || |||||||||||    
T  11338585 tctgattgcaagttagttgttgatgctattatctccacctctactcctcttaatgagtttggagatataatctctagatgtaa 11338503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 430
Target Start/End: Complemental strand, 55311319 - 55311249
Alignment:
Q  360 atctcgcaataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 430  Q
    |||| |||||||||||| ||| || ||||| ||||||||| ||| |||||||| |||||||||| ||||||    
T  55311319 atcttgcaataattttactgtaagttatgttaggaggcaagcaattaggatagcttataacataactagag 55311249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 55267126 - 55267186
Alignment:
Q  385 tatgtcaggaggcaaacaaataggatagtttataacatagctagagttaccttatttcatc 445  Q
    |||||||||||||||| ||||||| ||| | ||||||| ||||||||| |||||| |||||    
T  55267126 tatgtcaggaggcaaaaaaatagggtagctcataacattgctagagtttccttatctcatc 55267186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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