View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0894_low_9 (Length: 297)
Name: NF0894_low_9
Description: NF0894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0894_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 46473449 - 46473248
Alignment:
| Q |
52 |
gcaacaatattcatcaattatgttgtgtttcctggagtcgctagaaatcgttgtccaccactttaaagatgtcaatgttgtgcaagcccttttgccaagt |
151 |
Q |
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| T |
46473449 |
gcaacaatattcaccaattatgttgtgtttcct---------agaaatcgttgtccaccactttaaagatgtcaatgttgtgcaagcccttttgccaagt |
46473359 |
T |
|
| Q |
152 |
tgtccagcaatcagcattaataactttgagagtttatggttctgccgaatattcgaaaatgctagttcctcattctaaagtcaaaatggcagtagtgtgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46473358 |
tgtccagcaatcagcattaataactttgagagtttatggttctgccgaatattcgaaaatgctagttcctcattctaaagtcaaaatggcagtagtgtgt |
46473259 |
T |
|
| Q |
252 |
gagatattatt |
262 |
Q |
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||||||||||| |
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| T |
46473258 |
gagatattatt |
46473248 |
T |
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