View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0895_high_1 (Length: 1189)

Name: NF0895_high_1
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0895_high_1
NF0895_high_1
[»] chr3 (28 HSPs)
chr3 (538-1097)||(34897379-34897940)
chr3 (1-386)||(34898023-34898412)
chr3 (435-560)||(1995448-1995573)
chr3 (475-549)||(52859272-52859346)
chr3 (435-543)||(19830394-19830502)
chr3 (435-543)||(27033655-27033763)
chr3 (435-543)||(43719910-43720018)
chr3 (435-545)||(10474400-10474509)
chr3 (435-504)||(2229987-2230056)
chr3 (435-543)||(29586340-29586447)
chr3 (439-542)||(44637950-44638052)
chr3 (435-509)||(54911658-54911732)
chr3 (435-508)||(33632827-33632899)
chr3 (435-504)||(34373835-34373904)
chr3 (447-543)||(24754673-24754769)
chr3 (447-543)||(24763670-24763766)
chr3 (435-550)||(48084823-48084939)
chr3 (435-498)||(34373593-34373656)
chr3 (435-508)||(31523666-31523739)
chr3 (435-543)||(51982549-51982656)
chr3 (476-545)||(30235416-30235484)
chr3 (438-543)||(40851781-40851886)
chr3 (435-508)||(42613084-42613157)
chr3 (435-504)||(46167397-46167466)
chr3 (435-508)||(49679268-49679341)
chr3 (436-500)||(25285843-25285907)
chr3 (450-538)||(47750274-47750361)
chr3 (447-508)||(550814-550875)
[»] chr6 (21 HSPs)
chr6 (435-551)||(7215807-7215923)
chr6 (435-551)||(2800566-2800682)
chr6 (435-552)||(4804452-4804569)
chr6 (435-543)||(7162088-7162196)
chr6 (435-543)||(21159332-21159440)
chr6 (435-501)||(27826542-27826608)
chr6 (435-543)||(17828532-17828639)
chr6 (435-543)||(17944166-17944274)
chr6 (435-504)||(12412641-12412710)
chr6 (435-504)||(13089751-13089820)
chr6 (447-541)||(23936269-23936365)
chr6 (435-508)||(24484883-24484956)
chr6 (435-543)||(227526-227635)
chr6 (435-506)||(32254031-32254102)
chr6 (435-504)||(1249150-1249217)
chr6 (508-550)||(9952993-9953035)
chr6 (435-508)||(13888520-13888594)
chr6 (435-508)||(2142291-2142364)
chr6 (435-484)||(29698167-29698216)
chr6 (439-508)||(7545645-7545715)
chr6 (462-500)||(9954332-9954370)
[»] chr1 (21 HSPs)
chr1 (435-551)||(39426214-39426330)
chr1 (435-552)||(32887735-32887851)
chr1 (435-547)||(26860010-26860121)
chr1 (463-549)||(35534741-35534825)
chr1 (435-543)||(26372256-26372362)
chr1 (435-543)||(50294026-50294134)
chr1 (435-508)||(5047379-5047452)
chr1 (435-504)||(12151771-12151840)
chr1 (435-543)||(32618805-32618911)
chr1 (447-504)||(7840681-7840738)
chr1 (435-550)||(18976260-18976376)
chr1 (435-543)||(50484390-50484498)
chr1 (439-509)||(24977248-24977318)
chr1 (435-508)||(30077642-30077715)
chr1 (435-554)||(5854799-5854917)
chr1 (435-497)||(24413291-24413353)
chr1 (435-504)||(48327156-48327224)
chr1 (435-508)||(52280037-52280110)
chr1 (488-542)||(49384627-49384680)
chr1 (435-492)||(12380924-12380981)
chr1 (435-492)||(12384991-12385048)
[»] chr2 (28 HSPs)
chr2 (436-549)||(30709115-30709228)
chr2 (435-550)||(4446852-4446967)
chr2 (435-552)||(19908784-19908899)
chr2 (475-550)||(30217517-30217592)
chr2 (435-551)||(31618724-31618838)
chr2 (435-543)||(13238685-13238793)
chr2 (435-543)||(35316829-35316937)
chr2 (435-526)||(15709772-15709862)
chr2 (435-500)||(28564896-28564961)
chr2 (435-547)||(30857638-30857749)
chr2 (481-551)||(30721564-30721632)
chr2 (435-526)||(36929720-36929810)
chr2 (437-550)||(2063359-2063472)
chr2 (435-508)||(8988859-8988932)
chr2 (436-509)||(34512022-34512095)
chr2 (435-508)||(35315286-35315359)
chr2 (435-508)||(38397085-38397158)
chr2 (435-507)||(21454494-21454565)
chr2 (435-508)||(374997-375070)
chr2 (435-504)||(23259489-23259558)
chr2 (367-409)||(6946245-6946287)
chr2 (436-526)||(15722239-15722328)
chr2 (477-543)||(22061433-22061498)
chr2 (439-508)||(19905889-19905958)
chr2 (435-508)||(23459844-23459917)
chr2 (450-550)||(35315521-35315620)
chr2 (435-501)||(4603114-4603180)
chr2 (500-549)||(6946335-6946384)
[»] chr8 (23 HSPs)
chr8 (435-549)||(42761717-42761831)
chr8 (435-552)||(21360280-21360400)
chr8 (435-504)||(30426671-30426740)
chr8 (435-543)||(28069723-28069831)
chr8 (435-543)||(36991360-36991468)
chr8 (435-526)||(18689495-18689585)
chr8 (435-526)||(24557162-24557252)
chr8 (435-508)||(26749546-26749619)
chr8 (435-545)||(42338008-42338117)
chr8 (435-543)||(6014198-6014307)
chr8 (435-506)||(36748492-36748562)
chr8 (435-499)||(10672519-10672583)
chr8 (452-508)||(17520403-17520459)
chr8 (435-552)||(10652571-10652688)
chr8 (439-504)||(40695249-40695314)
chr8 (435-507)||(34612568-34612640)
chr8 (435-550)||(45113274-45113390)
chr8 (462-553)||(37966397-37966487)
chr8 (488-554)||(20169125-20169190)
chr8 (435-500)||(24102020-24102085)
chr8 (435-484)||(28318924-28318973)
chr8 (435-504)||(41511266-41511335)
chr8 (435-484)||(44859189-44859238)
[»] chr5 (28 HSPs)
chr5 (435-543)||(29340999-29341106)
chr5 (435-543)||(35660572-35660680)
chr5 (435-542)||(4895699-4895806)
chr5 (435-543)||(11775797-11775905)
chr5 (435-543)||(18625384-18625492)
chr5 (435-543)||(32129580-32129688)
chr5 (435-543)||(37266735-37266843)
chr5 (436-543)||(43309113-43309220)
chr5 (435-504)||(14349807-14349876)
chr5 (435-508)||(31653039-31653112)
chr5 (435-504)||(40753164-40753233)
chr5 (435-543)||(13032122-13032230)
chr5 (435-526)||(34827196-34827287)
chr5 (435-541)||(39902419-39902525)
chr5 (435-508)||(10362012-10362085)
chr5 (435-508)||(36290606-36290679)
chr5 (435-507)||(2984389-2984461)
chr5 (479-545)||(9460597-9460662)
chr5 (438-508)||(27428879-27428949)
chr5 (435-508)||(3057152-3057225)
chr5 (439-500)||(14688582-14688643)
chr5 (455-508)||(18653385-18653438)
chr5 (435-507)||(31279918-31279990)
chr5 (435-498)||(43222130-43222193)
chr5 (435-489)||(4592804-4592858)
chr5 (516-550)||(21213953-21213987)
chr5 (435-508)||(31546490-31546563)
chr5 (435-508)||(41660110-41660183)
[»] chr7 (33 HSPs)
chr7 (435-543)||(4888471-4888579)
chr7 (461-550)||(47270580-47270668)
chr7 (435-504)||(25084730-25084799)
chr7 (435-548)||(40023215-40023327)
chr7 (435-543)||(9559017-9559125)
chr7 (435-550)||(39855770-39855884)
chr7 (435-504)||(12139330-12139400)
chr7 (435-508)||(32915960-32916033)
chr7 (435-551)||(33450510-33450627)
chr7 (435-508)||(47799898-47799971)
chr7 (435-543)||(7712331-7712438)
chr7 (456-512)||(29844316-29844372)
chr7 (435-542)||(989133-989239)
chr7 (436-550)||(7373872-7373985)
chr7 (435-539)||(7362572-7362676)
chr7 (435-543)||(16366522-16366630)
chr7 (435-543)||(21151156-21151264)
chr7 (435-552)||(47500236-47500354)
chr7 (435-508)||(8149613-8149686)
chr7 (435-504)||(45260429-45260498)
chr7 (435-542)||(29631052-29631156)
chr7 (451-543)||(44647984-44648076)
chr7 (435-506)||(24193597-24193668)
chr7 (435-552)||(18198260-18198377)
chr7 (435-508)||(30588539-30588612)
chr7 (475-543)||(5463867-5463934)
chr7 (439-509)||(19027680-19027751)
chr7 (439-509)||(20726885-20726956)
chr7 (435-538)||(38365659-38365761)
chr7 (447-506)||(46802331-46802390)
chr7 (488-554)||(44390835-44390900)
chr7 (464-521)||(18064588-18064643)
chr7 (435-543)||(47226039-47226145)
[»] chr4 (37 HSPs)
chr4 (435-543)||(19901881-19901989)
chr4 (438-543)||(23610649-23610754)
chr4 (435-543)||(5416429-5416536)
chr4 (447-548)||(36532641-36532741)
chr4 (435-552)||(56558283-56558400)
chr4 (435-547)||(1871281-1871392)
chr4 (435-550)||(56453777-56453891)
chr4 (480-551)||(15178628-15178699)
chr4 (435-509)||(5763159-5763233)
chr4 (435-508)||(56269074-56269147)
chr4 (435-543)||(3952133-3952241)
chr4 (435-543)||(34778425-34778533)
chr4 (456-542)||(5815267-5815350)
chr4 (435-546)||(42844148-42844258)
chr4 (435-508)||(23474115-23474188)
chr4 (435-504)||(24073620-24073689)
chr4 (435-508)||(48914516-48914589)
chr4 (435-543)||(18207003-18207111)
chr4 (435-508)||(5524451-5524524)
chr4 (435-545)||(13493276-13493387)
chr4 (435-500)||(30567905-30567970)
chr4 (480-545)||(33841766-33841830)
chr4 (435-508)||(36688186-36688259)
chr4 (448-548)||(47922324-47922425)
chr4 (435-508)||(50483554-50483627)
chr4 (435-543)||(33247093-33247201)
chr4 (435-543)||(39862521-39862629)
chr4 (435-501)||(33262557-33262623)
chr4 (435-508)||(1015852-1015925)
chr4 (435-543)||(12312438-12312547)
chr4 (435-471)||(46804635-46804671)
chr4 (435-473)||(12241441-12241479)
chr4 (435-501)||(38079725-38079791)
chr4 (472-509)||(5817976-5818013)
chr4 (452-537)||(36003216-36003300)
chr4 (435-508)||(37002249-37002322)
chr4 (435-508)||(42010121-42010194)
[»] scaffold0062 (2 HSPs)
scaffold0062 (435-526)||(58684-58774)
scaffold0062 (436-526)||(70796-70885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (435-504)||(7151-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (435-508)||(29567-29640)
[»] scaffold0012 (1 HSPs)
scaffold0012 (435-543)||(208067-208175)
[»] scaffold0035 (1 HSPs)
scaffold0035 (435-504)||(16399-16468)
[»] scaffold0008 (1 HSPs)
scaffold0008 (435-504)||(9203-9272)
[»] scaffold0171 (1 HSPs)
scaffold0171 (435-501)||(17311-17377)
[»] scaffold0126 (1 HSPs)
scaffold0126 (435-498)||(22450-22513)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 538 - 1097
Target Start/End: Complemental strand, 34897940 - 34897379
Alignment:
Q  538 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 637  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  638 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctannnnnnnn-atcagctgatttgtccatttctacaacatttaagaaat 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  737 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 836  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897740 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 34897641  T
Q  837 atacagtaaattactataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatattt-aaaatatagtaaatc 935  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34897640 atacagtaaattactataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatatttaaaaatatagtaaatc 34897541  T
Q  936 actacaagatgcctttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttaggataaaaacatgcattttcta 1035  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34897540 actacaagatgcctttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttgggataaaaacatgcattttcta 34897441  T
Q  1036 agcataaagtcacgaaccattgatgtgtaaccctctctacgaagctaaagttagcattgatg 1097  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897440 agcataaagtcacgaaccattgatgtgtaaccctctctacgaagctaaagttagcattgatg 34897379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 34898412 - 34898023
Alignment:
Q  1 aactgtcgttcttagaaatttttgttgccggtctgaaacatggcagtgaattttgtgaagtaaatagttttgtttttctataaatttctaagaaaaatac 100  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  34898412 aactgtcgttctaagaaatttttgttgccggtcttaaacatggcagtgaatggtgtgaagtaaatagttttgtttttctttaaatttctaagaaaaatac 34898313  T
Q  101 aaatcaacagtccaaaatacaaccaaacctatctaagcata----caatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacat 196  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898312 aaatcaaccgtccaaaatacaaccaaacctatctaagcatatatacaatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacat 34898213  T
Q  197 caaatatatttgttcttggtcaaatgcttaatccgcatgatattccttcgtttacaacgtaagatccagtgagtcgtcaaactcaatattatacgtctta 296  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||    
T  34898212 caaatatatttgttcttggtcaaatgctcaatccgcatgatattccttcgtttacaacgtaagattcagtgagtcatcaaactcaatactatacatctta 34898113  T
Q  297 cgtctatataagggacatgttactaccaatcaagatatgttcattcattcactcaatacctcccactcgagtcaagatcttctccatttt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898112 cgtctatataagggacatgttactaccaatcaagatatgttcattcattcactcaatacctcccactcgagtcaagatcttctccatttt 34898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 435 - 560
Target Start/End: Original strand, 1995448 - 1995573
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||| ||| |||||| ||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||    
T  1995448 taattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatg 1995547  T
Q  535 aagaggatcctaacccctctcaccca 560  Q
    |||||||||||||||| | |||||||    
T  1995548 aagaggatcctaacccatgtcaccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 475 - 549
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  475 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 549  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 19830502 - 19830394
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||||| |||| |||| |||   |  ||||||||||||  ||||||    
T  19830502 taattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttgccaaatg 19830403  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  19830402 gagaggatc 19830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 27033655 - 27033763
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||| ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||||||||||    
T  27033655 taattaatgatggtgggatccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 27033754  T
Q  535 aagaggatc 543  Q
     ||| ||||    
T  27033755 gagatgatc 27033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 43720018 - 43719910
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  || |||||| ||||||||||||||||||| |||   |  |||||||||||| | |||||    
T  43720018 taattaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatg 43719919  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  43719918 gagaggatc 43719910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 545
Target Start/End: Complemental strand, 10474509 - 10474400
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||| | |||| || |||||||| |||||| |||||||||||||||||||||||| |||||| ||||||  ||| |||||||||| | ||||||     
T  10474509 taattaatgttggtggaactcacttaatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaata 10474411  T
Q  535 aagaggatcct 545  Q
     ||||||||||    
T  10474410 gagaggatcct 10474400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 2229987 - 2230056
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| | ||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  2229987 taattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 2230056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 29586340 - 29586447
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||| |||||||||||| ||| |||  | ||||||||||||||||||||||||||||||| ||  ||| |||||||||| |   |||||    
T  29586340 taattaatgatggtgagacccacttaatagtaagacttactatctattttatgtgtctatctctctccaaactgcatac-tccatttattatgctaaatg 29586438  T
Q  535 aagaggatc 543  Q
    |||||||||    
T  29586439 aagaggatc 29586447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 439 - 542
Target Start/End: Original strand, 44637950 - 44638052
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaaga 538  Q
    |||||| ||| ||||| ||||||| |||||  ||| |||||||||||||||| |||||||||| ||||||  ||| |||||||||||| |||||||| ||    
T  44637950 taatgacagtaggacctacttaatagtagggtccactatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatga 44638048  T
Q  539 ggat 542  Q
    ||||    
T  44638049 ggat 44638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 54911658 - 54911732
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 509  Q
    ||||||||||| |||| || || |||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  54911658 taattaatgatggtggaactcatttaatggtaggacccactacctattttatgtctctatctctcttcaaattgt 54911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 33632827 - 33632899
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||| | ||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  33632827 taattaatgat-gtggaatccatttaatagtaggatccactatctattttatgtgtctatctctctccaaattg 33632899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 34373835 - 34373904
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||| | ||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  34373835 taattaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctctctccaa 34373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 447 - 543
Target Start/End: Original strand, 24754673 - 24754769
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 543  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24754673 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 447 - 543
Target Start/End: Original strand, 24763670 - 24763766
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 543  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24763670 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 550
Target Start/End: Original strand, 48084823 - 48084939
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || |||||||||||||| ||||||||   |  || |||||||||| |||||    
T  48084823 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttattttagcaaat 48084922  T
Q  534 gaagaggatcctaaccc 550  Q
    | |||||||| ||||||    
T  48084923 ggagaggatcttaaccc 48084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 34373656 - 34373593
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 498  Q
    ||||||||||| |||||||||||||| ||||||||||||  |||||||||  ||||||||||||    
T  34373656 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctct 34373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 31523739 - 31523666
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||||    
T  31523739 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattg 31523666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 51982656 - 51982549
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  | | || ||||||||| ||| ||||| || ||||||||||| |||||||||||||||||||  | ||||||||||||||   |||||    
T  51982656 taattaatgatgatagaactcacttaatgatagaacccactaactattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatg 51982558  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  51982557 gagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  476 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 545  Q
    ||||||||| | ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 438 - 543
Target Start/End: Original strand, 40851781 - 40851886
Alignment:
Q  438 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 537  Q
    |||||||| || ||||||||||| |||| | |||||  ||||||||| ||||||||||| ||||||| |||   |  |||||||||||| ||||||  ||    
T  40851781 ttaatgatggtaggacccacttagtggttgaacccaccatctattttttgtgtctatctttctccaacttgcaaaactccatttattttgtcaaattgag 40851880  T
Q  538 aggatc 543  Q
    ||||||    
T  40851881 aggatc 40851886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 42613084 - 42613157
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| | ||||||||||||| |||||||    
T  42613084 taattaatgatggtgggacccacttagtgataggacccaccacttattttttttgtctatctctcttcaaattg 42613157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 46167397 - 46167466
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    |||||||| || || ||| ||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  46167397 taattaataatggtaggatccacttagtggtaggacccaccatatattttttgtgtctatctctctccaa 46167466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 49679341 - 49679268
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||| ||| || ||||||||   |  |||||| |||||||||||||||||||||||    
T  49679341 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaattg 49679268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 25285907 - 25285843
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 500  Q
    |||| ||||| ||||| | || |||||| ||||| ||| ||||||||||||||||||||||||||    
T  25285907 aattgatgatggtgggtctcatttaatgataggatccactatctattttatgtgtctatctctct 25285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 450 - 538
Target Start/End: Complemental strand, 47750361 - 47750274
Alignment:
Q  450 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaaga 538  Q
    |||| ||||||||| || ||| | ||||||||||| ||||| ||| ||||| |||||||| ||| | |||||||||| |||||||||||    
T  47750361 ggactcacttaatgataagactctttatctattttttgtgtttatgtctcttcaaattgtatacct-catttattttgtcaaatgaaga 47750274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 550875 - 550814
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||||||||| ||||| |||  ||||||||| ||| | ||||| |||||||||||    
T  550875 gtgggacccacttaatgataggatccaccatctattttttgtatatatctttctccaaattg 550814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 1e-44; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 435 - 551
Target Start/End: Complemental strand, 7215923 - 7215807
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7215923 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatg 7215824  T
Q  535 aagaggatcctaacccc 551  Q
     ||||||| ||||||||    
T  7215823 gagaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 435 - 551
Target Start/End: Complemental strand, 2800682 - 2800566
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||| |||||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  2800682 taatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatg 2800583  T
Q  535 aagaggatcctaacccc 551  Q
     ||||||||||||||||    
T  2800582 gagaggatcctaacccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 4804452 - 4804569
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  ||||||    
T  4804452 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatg 4804551  T
Q  535 aagaggatcctaacccct 552  Q
     |||||||| | ||||||    
T  4804552 gagaggatcttcacccct 4804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 7162088 - 7162196
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| | ||||||||||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||||||||||    
T  7162088 taattaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 7162187  T
Q  535 aagaggatc 543  Q
     ||| ||||    
T  7162188 gagatgatc 7162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 21159440 - 21159332
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||| ||||||||| |||   |  | ||||||||||| ||||||    
T  21159440 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatttctctccaacttgcaaaacttcatttattttaacaaatg 21159341  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  21159340 gagaggatc 21159332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 501
Target Start/End: Original strand, 27826542 - 27826608
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 501  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  27826542 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctc 27826608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 17828639 - 17828532
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||| ||||  ||||| ||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||  ||| |||| ||||| || ||||||    
T  17828639 taattattgatgatgggatccacttaatagtagaatccactatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatg 17828541  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  17828540 tagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 17944166 - 17944274
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||| ||| |||||||||| |  ||||||||| ||||||||||||||||||| ||    |  ||||||||||||  ||||||    
T  17944166 taattaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctctctccaacttacaaaactccatttattttgccaaatg 17944265  T
Q  535 aagaggatc 543  Q
    |||||||||    
T  17944266 aagaggatc 17944274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 12412641 - 12412710
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| ||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  12412641 taattaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaa 12412710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 13089820 - 13089751
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| ||||| |||||||| ||||||||||||  |||||| || |||||||||||||||||||    
T  13089820 taattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaa 13089751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 23936269 - 23936365
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaattgtgtacttccatttattttatcaaatgaagagga 541  Q
    ||||||||||||||||||||| | ||  |||| || |||||||||||  ||||||||| |||||||||||| |||| | ||||||||||| ||||||    
T  23936269 gtgggacccacttaatggtagaatccgctatccatcttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 24484883 - 24484956
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| |||||||||||||||||||||||    
T  24484883 taattaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattg 24484956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 227635 - 227526
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||| ||||||  ||||| ||||||| ||||||||||||  ||||||| || |||||||||||||||||||| ||   |  ||||||||||||| |||||    
T  227635 taatcaatgatgatgggatccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaat 227536  T
Q  534 gaagaggatc 543  Q
    | ||||||||    
T  227535 ggagaggatc 227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 32254102 - 32254031
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 506  Q
    ||||||||||||||||||| ||||||||| |||||||||  | || |||| | |||||||||| ||||||||    
T  32254102 taattaatgatagtgggactcacttaatgataggacccaccaccttttttttttgtctatctccctccaaat 32254031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 1249217 - 1249150
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||  | ||||| |||||||||||    
T  1249217 taattaatgatggtgggacccacttagtggtaggacccaccatctattt--tttgtctgtctctctccaa 1249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 508 - 550
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  508 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 550  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 13888594 - 13888520
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattg 508  Q
    |||||||||||  ||||||||| |||||||||||| |||  ||||||| || ||||| |||||||||||||||||    
T  13888594 taattaatgatgatgggacccagttaatggtaggaaccaccatctattattttgtgtatatctctctccaaattg 13888520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 2142364 - 2142291
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||| |||||| ||||| | |||||||  |  |||||| |||||||||||||||||||||||    
T  2142364 taattaatgatggtggaacccacctaatgatgggacccaccacttattttttgtgtctatctctctccaaattg 2142291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 29698167 - 29698216
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 484  Q
    ||||||||||| ||||||||||||||||||||||| |||  |||||||||    
T  29698167 taattaatgatggtgggacccacttaatggtaggatccaccatctatttt 29698216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 439 - 508
Target Start/End: Original strand, 7545645 - 7545715
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttat-gtgtctatctctctccaaattg 508  Q
    |||||||||||||| ||||||| || |||||||||  |  |||||| | ||||||||||||||||||||||    
T  7545645 taatgatagtgggatccacttagtgataggacccaccacttattttttggtgtctatctctctccaaattg 7545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 462 - 500
Target Start/End: Complemental strand, 9954370 - 9954332
Alignment:
Q  462 tggtaggacccattatctattttatgtgtctatctctct 500  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9954370 tggtgggacccactatctattttatgtgtctatctctct 9954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 1e-44; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 435 - 551
Target Start/End: Original strand, 39426214 - 39426330
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39426214 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 39426313  T
Q  535 aagaggatcctaacccc 551  Q
     ||| ||| ||||||||    
T  39426314 gagatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 435 - 552
Target Start/End: Complemental strand, 32887851 - 32887735
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||| |||||||||||| ||| ||| |||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  32887851 taattaatgatggtgggacccatttaatggtaggatccactatttattttatgtgtctatctttctctaaactgtgtac-tccatttattttatcaaatg 32887753  T
Q  535 aagaggatcctaacccct 552  Q
    ||||||||||||| ||||    
T  32887752 aagaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 435 - 547
Target Start/End: Complemental strand, 26860121 - 26860010
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||| ||||||| || ||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||     
T  26860121 taattaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaata 26860023  T
Q  535 aagaggatcctaa 547  Q
     ||| ||||||||    
T  26860022 gagatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 463 - 549
Target Start/End: Complemental strand, 35534825 - 35534741
Alignment:
Q  463 ggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 549  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534825 ggtaggatccactatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 26372256 - 26372362
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||| | ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||     
T  26372256 taattaatggtggtgggacccacttaatggtaggatctattgtctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaatt 26372353  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  26372354 gagaggatc 26372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 50294134 - 50294026
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| || ||| ||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  50294134 taattaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 50294035  T
Q  535 aagaggatc 543  Q
    |||||||||    
T  50294034 aagaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 5047452 - 5047379
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||||||| || |||||||| |||||||||||||||||  || ||||||||||||||||    
T  5047452 taattaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaaattg 5047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 12151771 - 12151840
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  12151771 taattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctctctccaa 12151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 32618805 - 32618911
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||| ||||||| |||||| ||| |||||| ||||| |||| ||||||||||||||||  ||| |||||||||| |  ||||||    
T  32618805 taattaatgatggtgggacctacttaatagtaggatccactatcta-tttatatgtccatctctctccaaattggatac-tccatttattatgccaaatg 32618902  T
Q  535 aagaggatc 543  Q
    |||||||||    
T  32618903 aagaggatc 32618911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 7840738 - 7840681
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  7840738 gtgggacccgcttaatggtaggacccatcatctatttcttgtgtctatctctctccaa 7840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 550
Target Start/End: Complemental strand, 18976376 - 18976260
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  ||||||| |||||||||| ||| |||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||    
T  18976376 taattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 18976277  T
Q  534 gaagaggatcctaaccc 550  Q
    | |||||||| ||||||    
T  18976276 ggagaggatcttaaccc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 50484390 - 50484498
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||  |||||||||||||| |||| | |||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  50484390 taattaatgacggtgggacccacttagtggttgtacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 50484489  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  50484490 gagaggatc 50484498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 439 - 509
Target Start/End: Original strand, 24977248 - 24977318
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 509  Q
    ||||||| |||| ||||||||| |||||||| |||  ||||||||| |||||||||||||||| |||||||    
T  24977248 taatgattgtggaacccacttagtggtaggatccaccatctattttttgtgtctatctctctctaaattgt 24977318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 30077715 - 30077642
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||||||||||| |||||| || ||| |||||  |  |||||| |||||||||||||||||||||||    
T  30077715 taattaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctctctccaaattg 30077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 435 - 554
Target Start/End: Complemental strand, 5854917 - 5854799
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||||| ||| || ||||||||| ||| | || | ||| | ||||||||||| | |||||||| ||| |||||||||| | |||||||    
T  5854917 taattaatgatgatgggatccattttatggtaggatccactctcaaatttttatgtctatctcttttcaaattgtatac-tccatttattctttcaaatg 5854819  T
Q  535 aagaggatcctaacccctct 554  Q
     |||||||| ||||||||||    
T  5854818 tagaggatcataacccctct 5854799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 24413353 - 24413291
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctc 497  Q
    ||||||||||| |||||||||| |||||| |||||||||  ||| ||||| ||||||||||||    
T  24413353 taattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 48327224 - 48327156
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| ||||||||| ||||||||| ||  ||||||||| | |||||||||||||||||    
T  48327224 taattaatgatggtgg-acccacttagtggtaggactcaccatctattttttttgtctatctctctccaa 48327156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 52280110 - 52280037
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||| ||||||| || |||||||||  |  |||||| | |||||||||||||||||||||    
T  52280110 taattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctctctccaaattg 52280037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  488 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 542  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 12380981 - 12380924
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtct 492  Q
    ||||||||||| ||||||| |||||| |||||| |||||  ||||||||| |||||||    
T  12380981 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 12385048 - 12384991
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtct 492  Q
    ||||||||||| ||||||| |||||| |||||| |||||  ||||||||| |||||||    
T  12385048 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 1e-35; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 30709115 - 30709228
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatga 535  Q
    |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||     
T  30709115 aattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatgg 30709214  T
Q  536 agaggatcctaacc 549  Q
    ||||||||||||||    
T  30709215 agaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 435 - 550
Target Start/End: Complemental strand, 4446967 - 4446852
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||||||  ||||| ||| |||||||| ||| |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  4446967 taattaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatg 4446868  T
Q  535 aagaggatcctaaccc 550  Q
     ||||||| |||||||    
T  4446867 gagaggatactaaccc 4446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 19908784 - 19908899
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||||  ||||||| || ||||||||||||||||||||||| ||||||||||  ||| |||||||||| |||||||||    
T  19908784 taattaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgcatac-tccatttattatatcaaatg 19908881  T
Q  535 aagaggatcctaacccct 552  Q
    ||||||||| | ||||||    
T  19908882 aagaggatctttacccct 19908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 475 - 550
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  475 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 550  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 435 - 551
Target Start/End: Complemental strand, 31618838 - 31618724
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||||||| ||||||||| || ||| || |||||||||||| | ||||||| |||||||||||| ||| |||||||  |||||||||||    
T  31618838 taattaatgattgtgggactcacttaatgatatgactcactatctattttatatatctatctttctccaaattgtatac-tccattt-ctttatcaaatg 31618741  T
Q  535 aagaggatcctaacccc 551  Q
     ||||||||||||||||    
T  31618740 gagaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 13238685 - 13238793
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||  ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  13238685 taattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 13238784  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  13238785 gagaggatc 13238793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 35316829 - 35316937
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  35316829 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 35316928  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  35316929 gagaggatc 35316937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 15709772 - 15709862
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  15709772 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 15709862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 28564896 - 28564961
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 500  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  28564896 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctct 28564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 547
Target Start/End: Complemental strand, 30857749 - 30857638
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||| || ||| ||||| |||||| |||||||||||||| |||||||| |||||| ||||||   ||| |||||||||||| | |||||    
T  30857749 taattaatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatg 30857651  T
Q  535 aagaggatcctaa 547  Q
     ||||||||||||    
T  30857650 gagaggatcctaa 30857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  481 ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 551  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 36929720 - 36929810
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    ||||||||||| | || | ||| ||||||||||||| || || |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  36929720 taattaatgatggcggaatccatttaatggtaggacacactacctattttatgtgtctatctctctccaaattgcatac-tccatttatttt 36929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 437 - 550
Target Start/End: Original strand, 2063359 - 2063472
Alignment:
Q  437 attaatgatagtgggacccacttaatggtaggacccatt-atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatga 535  Q
    ||||||||| |||| ||||||||  |||||||||| |   ||||||||| |||||||||||||||||||||||   || || ||||||||| ||||||||    
T  2063359 attaatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatga 2063457  T
Q  536 agaggatcctaaccc 550  Q
    |||||||| ||||||    
T  2063458 agaggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 8988859 - 8988932
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || ||||||| || |  |||||| |||||||||||||||||||||||    
T  8988859 taattaatgatggtgggacccacttagtgataggacctatcacttattttttgtgtctatctctctccaaattg 8988932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 436 - 509
Target Start/End: Complemental strand, 34512095 - 34512022
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 509  Q
    |||||||||| ||| |||| ||||||| |||  ||||| |||||||||||||||||||||| ||||||||||||    
T  34512095 aattaatgattgtgagacctacttaatagtataacccactatctattttatgtgtctatctttctccaaattgt 34512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 35315359 - 35315286
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||||| || ||||||| || ||||| ||| || |||||||||||||||||||||||||||||| |||||||    
T  35315359 taattaataatggtgggactcaattaatagtaagatccattatctattttatgtgtctatctctcttcaaattg 35315286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 38397085 - 38397158
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||| |||| ||||||| |||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||    
T  38397085 taattattgatggtgggactcacttaatagtagcacccactatctattttatttgtctatctctcttcaaattg 38397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 507
Target Start/End: Complemental strand, 21454565 - 21454494
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 507  Q
    ||||||||||| |||| ||||||||||||||| ||||||  ||||||||| |||||||||||||||| |||||    
T  21454565 taattaatgatggtggaacccacttaatggtatgacccacaatctatttt-tgtgtctatctctctctaaatt 21454494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 374997 - 375070
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||||    
T  374997 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattg 375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 23259558 - 23259489
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||| ||||||| | ||||||||||  | ||||||| |||||||||||||||||||    
T  23259558 taattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaa 23259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 6946245 - 6946287
Alignment:
Q  367 gtcaagatcttctccattttttcatttggagagatatagactc 409  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  6946245 gtcaagatcttcttcattttttaatttggagagatatagactc 6946287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 436 - 526
Target Start/End: Original strand, 15722239 - 15722328
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||| |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||||  || |||||||||||||    
T  15722239 aattaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaattgcata-ttccatttatttt 15722328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 477 - 543
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  477 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 543  Q
    |||||||||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 439 - 508
Target Start/End: Original strand, 19905889 - 19905958
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||| ||||||| ||||||||  || | ||||  |||||||||||||||||||||||||| ||||||    
T  19905889 taatgatggtgggactcacttaataatatgtcccaccatctattttatgtgtctatctctctcaaaattg 19905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 23459917 - 23459844
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||| ||| || ||||||||   |  |||||| |||||||||||||||||||||||    
T  23459917 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaattg 23459844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 450 - 550
Target Start/End: Original strand, 35315521 - 35315620
Alignment:
Q  450 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 549  Q
    |||| ||||||||| |||||||||  | ||||| | ||||| |||||||||||||||||  | ||||||||||||||   ||||| |||||||| |||||    
T  35315521 ggactcacttaatgataggacccaccacctattgtttgtgtttatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacc 35315619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 4603180 - 4603114
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 501  Q
    ||||||||||| ||||||||||  ||||||||| || |||||| |||| | | ||||||||||||||    
T  4603180 taattaatgatggtgggacccatctaatggtagaactcattatatattgtctatgtctatctctctc 4603114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  500 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 549  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 42761717 - 42761831
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||| ||||||| | |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||    
T  42761717 taattaatgatgatggaacccactgagtggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtg 42761816  T
Q  535 aagaggatcctaacc 549  Q
    |||||||||||||||    
T  42761817 aagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 21360280 - 21360400
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta----cttccatttattttatca 530  Q
    |||||||| || |||||  ||||||||||||| || | ||||||||| |||||||| |||||||||||||||| ||||    |||| |||||||||||||    
T  21360280 taattaataatggtggggtccacttaatggtatgatctattatctatattatgtgtttatctctctccaaattatgtatgtacttc-atttattttatca 21360378  T
Q  531 aatgaagaggatcctaacccct 552  Q
    |||| |||||||||||||||||    
T  21360379 aatggagaggatcctaacccct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 30426740 - 30426671
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  30426740 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 30426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 28069723 - 28069831
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  ||||||    
T  28069723 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatg 28069822  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  28069823 gagaggatc 28069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 36991360 - 36991468
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||  | ||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  36991360 taattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatg 36991459  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  36991460 gagaggatc 36991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 18689495 - 18689585
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  18689495 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 18689585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 435 - 526
Target Start/End: Complemental strand, 24557252 - 24557162
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||  | ||||||||||||||    
T  24557252 taattaatgatgatgggactcacttaatggtaggacccattacctattttatgtctatatctctttccaaattgcat-cttccatttatttt 24557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 26749619 - 26749546
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  26749619 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 26749546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 435 - 545
Target Start/End: Complemental strand, 42338117 - 42338008
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| | ||||| |||||||| |||  | ||| |||||||||||  ||| ||| |||||||||||| | |||||  |||||||||||||||||    
T  42338117 taattaatgatggagggacacacttaatagtacaatccactatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatg 42338019  T
Q  535 aagaggatcct 545  Q
    |||||||||||    
T  42338018 aagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 6014198 - 6014307
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||| | ||| |||||||||||||||||| || ||||||| || ||||||||||| |||||||||||   |  || |||||||||| |||||    
T  6014198 taattaatgataataggatccacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaat 6014297  T
Q  534 gaagaggatc 543  Q
    | ||||||||    
T  6014298 ggagaggatc 6014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 36748562 - 36748492
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 506  Q
    ||||||||||| |||||| |||||||||||||||||||  | |||||||| ||||||||||| |||||||||    
T  36748562 taattaatgatggtgggatccacttaatggtaggacccgctgtctatttt-tgtgtctatctatctccaaat 36748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 499
Target Start/End: Complemental strand, 10672583 - 10672519
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctc 499  Q
    ||||||||||| ||||||| |||||| |||||||| |||  ||||||||| ||||||||||||||    
T  10672583 taattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatctctc 10672519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 452 - 508
Target Start/End: Original strand, 17520403 - 17520459
Alignment:
Q  452 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||| |  |||||||||||||||||||| |||||||||||||    
T  17520403 acccacttaatagtaggactcgctatctattttatgtgtctatatctctccaaattg 17520459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 552
Target Start/End: Complemental strand, 10652688 - 10652571
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||| ||| | ||| ||||||  ||| ||||| ||| ||||||||||||||| |||   |   |||||||||||| ||||||    
T  10652688 taattaatgatggtgggacccaattagtagtatgacccaccatcaattttttgtatctatctctctccaacttgcaaaacaccatttattttaccaaatg 10652589  T
Q  535 aagaggatcctaacccct 552  Q
     |||||||| | ||||||    
T  10652588 gagaggatcttcacccct 10652571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 40695314 - 40695249
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||| |||| || |||||| |||||||||| |  ||||||||| |||||||||||||||||||    
T  40695314 taatgatggtggaactcacttagtggtaggacctaccatctattttttgtgtctatctctctccaa 40695249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 435 - 507
Target Start/End: Original strand, 34612568 - 34612640
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 507  Q
    ||||||||||| ||| |||||||||| || |||||||||  |  |||||| |||||||||||||||| |||||    
T  34612568 taattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctctctctaaatt 34612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 435 - 550
Target Start/End: Original strand, 45113274 - 45113390
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  |||||| |||||| |||| |||||||  ||||||| || ||||||||| |||||||||||||   |   | |||||||||| |||||    
T  45113274 taattaatgatgatgggacacacttagtggttggacccaccatctattcttttgtgtctatgtctctccaaattgcaaaacacaatttattttagcaaat 45113373  T
Q  534 gaagaggatcctaaccc 550  Q
    | |||||||| ||||||    
T  45113374 ggagaggatcttaaccc 45113390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 37966487 - 37966397
Alignment:
Q  462 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctc 553  Q
    |||||||||| |  ||||||||| ||||| ||||||||| |||||||   | |||||||||||||  |||||| |||||||| |||||||||    
T  37966487 tggtaggacctacaatctattttttgtgtttatctctcttcaaattgcaaa-ttccatttattttgccaaatggagaggatcttaacccctc 37966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  488 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 554  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 24102020 - 24102085
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 500  Q
    ||||||||||| |||| || |||||| |||||||| |||  ||||||||| | |||||||||||||    
T  24102020 taattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatctctct 24102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 28318973 - 28318924
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 484  Q
    ||||||||||| || ||||||||||| |||||||||||| ||||| ||||    
T  28318973 taattaatgatggttggacccacttagtggtaggacccactatctttttt 28318924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 41511266 - 41511335
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| | ||||||| || ||||||||| |||||||||| | | ||||||||| |||||    
T  41511266 taattaatgatggtggaaaccacttagtgataggacccactatctattttttatatctatctctttccaa 41511335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 44859238 - 44859189
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatttt 484  Q
    ||||||||||| |||||||||||||| |||||| |||||  |||||||||    
T  44859238 taattaatgatggtgggacccacttagtggtagaacccaccatctatttt 44859189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 6e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 29340999 - 29341106
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||  ||| |||||||||| || ||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatg 29341097  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  29341098 gagaggatc 29341106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 35660680 - 35660572
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  35660680 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 35660581  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  35660580 gagaggatc 35660572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 435 - 542
Target Start/End: Complemental strand, 4895806 - 4895699
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||     
T  4895806 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaata 4895707  T
Q  535 aagaggat 542  Q
    ||||||||    
T  4895706 aagaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 11775797 - 11775905
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||  |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| ||||||    
T  11775797 taattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 11775896  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  11775897 gagaggatc 11775905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 18625492 - 18625384
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  ||||||    
T  18625492 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatg 18625393  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  18625392 gagaggatc 18625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 32129688 - 32129580
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  |||||||||  |||||||||||||||||| || |  |  ||||||||||||  ||||||    
T  32129688 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttgccaaatg 32129589  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  32129588 gagaggatc 32129580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 37266735 - 37266843
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  37266735 taattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 37266834  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  37266835 gagaggatc 37266843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 436 - 543
Target Start/End: Original strand, 43309113 - 43309220
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatga 535  Q
    |||||||||| |||| ||||| ||||||||| || ||| |||||||||| | ||||||||||||||||| |||   |  ||||||||||||||||||| |    
T  43309113 aattaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataa 43309212  T
Q  536 agaggatc 543  Q
    ||||||||    
T  43309213 agaggatc 43309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 14349807 - 14349876
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  14349807 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaa 14349876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 31653039 - 31653112
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||| ||| |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||    
T  31653039 taattaatgattgtgagactcacttaatagtaggactcgctatctattttatgtgtttatctctctccaaattg 31653112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 40753233 - 40753164
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  || |||||| ||||||||||| |||||||    
T  40753233 taattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatctttctccaa 40753164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 13032122 - 13032230
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||| ||| ||||||||| ||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  13032122 taattaatgatggtgggacccatttagtggtaggactcaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 13032221  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  13032222 gagaggatc 13032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 34827196 - 34827287
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    ||||||| ||| |||||||||||||| |||||||| |||  ||||||||| | ||||||||||||||||| |||  ||  ||||||||||||    
T  34827196 taattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttatttt 34827287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 435 - 541
Target Start/End: Original strand, 39902419 - 39902525
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||| | ||| ||| ||||||||||||  ||||||||  ||||| ||||||||||||| ||||  |  |||||||||||| |||||||    
T  39902419 taattaatgatggtggaatccatttagtggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatg 39902518  T
Q  535 aagagga 541  Q
     ||||||    
T  39902519 gagagga 39902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 10362085 - 10362012
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||  ||| ||||||||||||||||||| ||| || | ||||||||| ||||||||||||| |||||    
T  10362085 taattaatgacggtgagacccacttaatggtaggatccactaccaattttatgtctctatctctctcctaattg 10362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 36290606 - 36290679
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||| ||||||| || |||||||||  |  |||||| |||||||||||||||||||||||    
T  36290606 taattaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattg 36290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 507
Target Start/End: Complemental strand, 2984461 - 2984389
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 507  Q
    ||||||||||| |||||||||| ||| || |||||  ||| |  |||||||||||||||||||||||||||||    
T  2984461 taattaatgatggtgggacccatttagtgataggattcatcacttattttatgtgtctatctctctccaaatt 2984389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 479 - 545
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  479 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 545  Q
    |||| |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 27428949 - 27428879
Alignment:
Q  438 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||||| |||| || |||||||||||||||  ||  ||||||||| ||||||||||||| |||||||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctctttccaaattg 27428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 3057225 - 3057152
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||||||||  || ||| ||||||||||||||| |||  ||||||||| ||||| ||||||| |||||||||    
T  3057225 taattaatgattatgtgactcacttaatggtaggatccaccatctattttttgtgtttatctctatccaaattg 3057152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 14688582 - 14688643
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 500  Q
    ||||||| |||| | |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  14688582 taatgatggtggaatccacttaatggtagaatccaatatctattttatgtgtcgatctctct 14688643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 455 - 508
Target Start/End: Original strand, 18653385 - 18653438
Alignment:
Q  455 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||||| || || |||||||||| ||||||||||||||| |||||||    
T  18653385 cacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattg 18653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 435 - 507
Target Start/End: Original strand, 31279918 - 31279990
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 507  Q
    |||||||| || || |||||||| ||||| |||||||||  || ||||||||||||||| | |||||||||||    
T  31279918 taattaattatggtaggacccacataatgataggacccacaatttattttatgtgtctagcactctccaaatt 31279990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 435 - 498
Target Start/End: Original strand, 43222130 - 43222193
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 498  Q
    ||||||||||| |||||| ||| |||||| || ||||||  ||||||||| |||||||||||||    
T  43222130 taattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctct 43222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 4592804 - 4592858
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtg 489  Q
    ||||||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||    
T  4592804 taattaatgatggtgggacccacttagtggtaagacccaccatctattttttgtg 4592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 550
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  516 ccatttattttatcaaatgaagaggatcctaaccc 550  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 31546490 - 31546563
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||||| ||  ||||| ||||||||| ||||| ||||  ||||||||||| |||||| |||||| |||||||    
T  31546490 taattaattatgatgggatccacttaatagtagggcccaccatctattttatatgtctacctctcttcaaattg 31546563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 41660110 - 41660183
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||||||| || || |  ||||||  |  |||||| |||||||||||||||||||||||    
T  41660110 taattaatgatggtgggacccacctagtgatgagacccaccacttattttttgtgtctatctctctccaaattg 41660183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 4888471 - 4888579
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||| |||   |  |||||||||||| |||||||    
T  4888471 taattaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatg 4888570  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  4888571 gagaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 461 - 550
Target Start/End: Original strand, 47270580 - 47270668
Alignment:
Q  461 atggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 550  Q
    |||||||| || ||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270580 atggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 25084799 - 25084730
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  25084799 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 25084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 435 - 548
Target Start/End: Complemental strand, 40023327 - 40023215
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||| | |||||||||||||||||||| || |||||| ||||||||| ||||||||| |||||||||||| ||| ||  |||||||| ||||||     
T  40023327 taattaatggtggtgggacccacttaatggtaagatccattaactattttatatgtctatctttctccaaattgtatac-tcgttttattttttcaaata 40023229  T
Q  535 aagaggatcctaac 548  Q
     ||||||| |||||    
T  40023228 gagaggattctaac 40023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 9559125 - 9559017
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| |||   |  ||||||||||||  ||||||    
T  9559125 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatg 9559026  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  9559025 gagaggatc 9559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 435 - 550
Target Start/End: Complemental strand, 39855884 - 39855770
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||||||||||||| |||||||||| |  |||| |||||||||||||||||||||||||||    || |||||||| ||| |||||||    
T  39855884 taattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaac-tccatttaatttgtcaaatg 39855786  T
Q  535 aagaggatcctaaccc 550  Q
    ||||| ||| ||||||    
T  39855785 aagagaatcttaaccc 39855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 12139330 - 12139400
Alignment:
Q  435 taattaatgatagtgggaccc-acttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| ||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12139330 taattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaa 12139400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 32915960 - 32916033
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||    
T  32915960 taattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctctcttcaaattg 32916033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 551
Target Start/End: Original strand, 33450510 - 33450627
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||    
T  33450510 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 33450609  T
Q  534 gaagaggatcctaacccc 551  Q
    | |||||||| |||||||    
T  33450610 ggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 47799971 - 47799898
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  47799971 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 47799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 7712438 - 7712331
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||| ||| |||| ||||||||||||||||||| || ||||||| |||||| |||||||||||| ||||||  | ||||||||||||||   |||||    
T  7712438 taattaaagatggtggcacccacttaatggtaggactcactatctatcttatgtctctatctctctctaaattgcat-cttccatttatttttataaatg 7712340  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  7712339 gagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 29844316 - 29844372
Alignment:
Q  456 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta 512  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29844316 acttagtggtagaacccactatctattttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 989133 - 989239
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||| || || ||||| ||||| |||||||||||| ||| |||||| |||||||||||||||||||||||   || |||||||| ||| |||||||    
T  989133 taattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctctctccaaattgcaaac-tccatttaatttgtcaaatg 989231  T
Q  535 aagaggat 542  Q
     |||||||    
T  989232 gagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 7373872 - 7373985
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatga 535  Q
    ||||||||||||||||| | ||||||| ||| |||||| | |||||||| |||  ||||||||||||||||||  || | |||||||||||| | || ||    
T  7373872 aattaatgatagtgggatctacttaatagtaagacccactgtctattttttgtacctatctctctccaaattgcata-tcccatttattttaaccaacga 7373970  T
Q  536 agaggatcctaaccc 550  Q
    |||||||| ||||||    
T  7373971 agaggatcttaaccc 7373985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 539
Target Start/End: Original strand, 7362572 - 7362676
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||| ||||| ||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| |||||||    
T  7362572 taattaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatg 7362671  T
Q  535 aagag 539  Q
     ||||    
T  7362672 gagag 7362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 16366522 - 16366630
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||||||| |||||| |||||||| |||  ||||||||  | ||||||||||||||||| |||   |  |||||||||||| |||||||    
T  16366522 taattaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 16366621  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  16366622 gagaggatc 16366630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 21151156 - 21151264
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| |||||||| ||   ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  21151156 taattaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 21151255  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  21151256 gagaggatc 21151264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 435 - 552
Target Start/End: Complemental strand, 47500354 - 47500236
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  ||||||||||||| |||| |||||||  ||||||| || ||||||||||||||||||||||    |  || ||||||||||  ||||    
T  47500354 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattacaaaactcaatttattttagtaaat 47500255  T
Q  534 gaagaggatcctaacccct 552  Q
    | |||||||| ||||||||    
T  47500254 ggagaggatcttaacccct 47500236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 8149613 - 8149686
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||||||||||||| || |||||| ||  ||||||| || ||||||||||| |||||||    
T  8149613 taattaatgatggtgggacccacttaatgatatgacccactacttattttacgtctctatctctcttcaaattg 8149686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 45260498 - 45260429
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    |||||||||||  ||||| ||||||| |||||||| |||  ||||||||| |||||||||||||||||||    
T  45260498 taattaatgatgatgggatccacttagtggtaggatccacaatctattttttgtgtctatctctctccaa 45260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 29631052 - 29631156
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||||||||||| || || |||| ||||||| ||||||| || |||||||||||||   |||||||   ||| |||||||||||| ||||||    
T  29631052 taattaatgatagtgggacctacatagtggttggacccactatctatgttttgtgtctatctctt--caaattgcaaact-ccatttattttaccaaatg 29631148  T
Q  535 aagaggat 542  Q
     |||||||    
T  29631149 gagaggat 29631156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 451 - 543
Target Start/End: Original strand, 44647984 - 44648076
Alignment:
Q  451 gacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 543  Q
    |||||||||| |||| ||| |||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  44647984 gacccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 24193597 - 24193668
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 506  Q
    |||||| ||||  ||||| ||| ||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  24193597 taattactgatgatgggatccatttaatggtaagactcattgtctattttatgtgtctatctctcttcaaat 24193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 18198260 - 18198377
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||||||| |||||| ||| || |||||  ||||||||| ||||||||| | ||||||| |||   |  ||||||||||||  ||||||    
T  18198260 taattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctatttatctccaatttgcaaaactccatttattttgccaaatg 18198359  T
Q  535 aagaggatcctaacccct 552  Q
     |||||||| | ||||||    
T  18198360 gagaggatcttcacccct 18198377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 30588539 - 30588612
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||| | |  |||||| |||||||||||||  ||||||||    
T  30588539 taattaatgatggtgggacccacttagtgataggacccgtcacttattttttgtgtctatctcttcccaaattg 30588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 475 - 543
Target Start/End: Complemental strand, 5463934 - 5463867
Alignment:
Q  475 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 543  Q
    |||||||||||||||| ||| |||||||||||||| ||| |  ||||||| ||||||||| ||||||||    
T  5463934 tatctattttatgtgtttatatctctccaaattgtatac-tatatttattatatcaaatggagaggatc 5463867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 439 - 509
Target Start/End: Complemental strand, 19027751 - 19027680
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttat-gtgtctatctctctccaaattgt 509  Q
    ||||||| |||||| ||||||| || |||||||||  || |||||| | |||||||||||||||||||||||    
T  19027751 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaaattgt 19027680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 439 - 509
Target Start/End: Original strand, 20726885 - 20726956
Alignment:
Q  439 taatgatagtgggacccacttaatggtaggacccattatctattttat-gtgtctatctctctccaaattgt 509  Q
    ||||||| |||||| ||||||| || |||||||||  || |||||| | |||||||||||||||||||||||    
T  20726885 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaaattgt 20726956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 435 - 538
Target Start/End: Original strand, 38365659 - 38365761
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||||| | | ||| ||||| ||| ||||||||||| ||||| ||| |||||||| || ||||||  ||| || |||||||||||  |||||    
T  38365659 taattaatgatagtagaatccatttaatagtaagacccattatcaattttttgtatctatctcacttcaaattacgta-ttacatttattttaaaaaatg 38365757  T
Q  535 aaga 538  Q
    ||||    
T  38365758 aaga 38365761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 46802390 - 46802331
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 506  Q
    |||||||||||||| ||||||||||||   |||||||| | |||||||||||||| ||||    
T  46802390 gtgggacccacttagtggtaggacccaccgtctattttttatgtctatctctctctaaat 46802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  488 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 554  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 521
Target Start/End: Original strand, 18064588 - 18064643
Alignment:
Q  464 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccattt 521  Q
    ||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18064588 gtaggactcactgtctattttatgtgtctatctctctcc-aattgtgta-ttccattt 18064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 47226145 - 47226039
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||| ||| |||| |||||||  |  |||||| ||||| ||||||||||||| |||   |  ||||||||||||  ||||||    
T  47226145 taattaatgatggtgggacccatttagtggtgggacccacca--tattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatg 47226048  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  47226047 gagaggatc 47226039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 19901989 - 19901881
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| ||||||    
T  19901989 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 19901890  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  19901889 gagaggatc 19901881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 438 - 543
Target Start/End: Original strand, 23610649 - 23610754
Alignment:
Q  438 ttaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 537  Q
    |||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||||||||||| ||    
T  23610649 ttaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggag 23610748  T
Q  538 aggatc 543  Q
    ||||||    
T  23610749 aggatc 23610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 5416536 - 5416429
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| |||||||    
T  5416536 taattaatgatggtgggacccacttagtggtaggacccacaatctatttt-tgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 5416438  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  5416437 gagaggatc 5416429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 447 - 548
Target Start/End: Original strand, 36532641 - 36532741
Alignment:
Q  447 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 546  Q
    |||| ||||||| |||| ||||| ||| ||| ||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||    
T  36532641 gtggaacccactgaatgataggatccactatttattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatctta 36532739  T
Q  547 ac 548  Q
    ||    
T  36532740 ac 36532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 56558283 - 56558400
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| || |||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  56558283 taattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 56558382  T
Q  535 aagaggatcctaacccct 552  Q
     |||||||| | ||||||    
T  56558383 gagaggatcttcacccct 56558400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 547
Target Start/End: Original strand, 1871281 - 1871392
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||||||||||||| | |||||| ||| ||||||| || | |||||||||||||||||||||  ||| |||||||||||| ||||||     
T  1871281 taattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaatt 1871379  T
Q  535 aagaggatcctaa 547  Q
     ||||||||||||    
T  1871380 gagaggatcctaa 1871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 550
Target Start/End: Complemental strand, 56453891 - 56453777
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattt-tatcaaat 533  Q
    |||| |||||| ||||||||||||||||| |||||||||  | ||||||| |||||||||||||||||||||||  | ||||||||||||| ||| ||||    
T  56453891 taatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaat 56453794  T
Q  534 gaagaggatcctaaccc 550  Q
    | |||||||| ||||||    
T  56453793 ggagaggatcttaaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 480 - 551
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  480 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 551  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 5763233 - 5763159
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 509  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| ||||    
T  5763233 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctctctccaacttgt 5763159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 56269147 - 56269074
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| ||||||||||||  |  |||||| |||||||||||||||||||||||    
T  56269147 taattaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctctctccaaattg 56269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 3952241 - 3952133
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| ||| |||||||||| ||||||||||||  ||||||||| | ||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  3952241 taattaatgatggtgagacccacttagtggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatg 3952142  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  3952141 gagaggatc 3952133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 34778425 - 34778533
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||| ||| |||   |  ||||||||||||  ||||||    
T  34778425 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatg 34778524  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  34778525 gagaggatc 34778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 456 - 542
Target Start/End: Complemental strand, 5815350 - 5815267
Alignment:
Q  456 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 542  Q
    ||||| ||||| |||||||||| ||||||  ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815350 acttagtggtatgacccattatatatttt--gtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 435 - 546
Target Start/End: Complemental strand, 42844258 - 42844148
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| | |||| ||| ||||| ||||||| || | |||||||||||||||||||| |||||||||||| ||  || ||||||||||| | |||    
T  42844258 taattaatgatggagggatccatttaatagtaggacacactctctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatg 42844160  T
Q  535 aagaggatccta 546  Q
     |||||||||||    
T  42844159 gagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 23474115 - 23474188
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||  |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||    
T  23474115 taattaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctctccccaaattg 23474188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 24073620 - 24073689
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| | |||||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  24073620 taattaatgatggcgggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaa 24073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 48914589 - 48914516
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||||| || |||||||| ||| |||||||||  |||||||||||||||| ||||||||| ||||||    
T  48914589 taattaatgatagcggaacccactttatgataggacccacaatctattttatgtgtcgatctctctctaaattg 48914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 18207111 - 18207003
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||||||||||||| ||||||||||||  ||||||||| | |||||||||||||| || |||   |  | |||||||||| |||||||    
T  18207111 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttttgtctatctctctctaacttgcaaaactacatttattttgtcaaatg 18207012  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  18207011 gagaggatc 18207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 5524451 - 5524524
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| | |||||||||||||||||||||    
T  5524451 taattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctctctccaaattg 5524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 545
Target Start/End: Original strand, 13493276 - 13493387
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaattgtgtacttccatttattttatcaaa 532  Q
    ||||||||||||  ||||| |||||| |||| ||| ||| ||||||||||| |||||||  |||||||| ||||||  ||| |||||||||||| |||||    
T  13493276 taattaatgataaagggactcacttagtggtgggatccactatctattttacgtgtctatctctctctctaaattgcatac-tccatttattttgtcaaa 13493374  T
Q  533 tgaagaggatcct 545  Q
    |  ||||||||||    
T  13493375 tagagaggatcct 13493387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 30567905 - 30567970
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 500  Q
    |||||||||||  ||| ||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  30567905 taattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctct 30567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  480 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 545  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 36688259 - 36688186
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| || |||||| ||  |  |||||| |||||||||||||||||||||||    
T  36688259 taattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaaattg 36688186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 448 - 548
Target Start/End: Complemental strand, 47922425 - 47922324
Alignment:
Q  448 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 546  Q
    ||||||||||||| ||||||||||||  ||||||| || ||||||||| |||||||||||||   |  || |||||||||| |||||| |||||||| ||    
T  47922425 tgggacccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagaggatctta 47922326  T
Q  547 ac 548  Q
    ||    
T  47922325 ac 47922324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 50483627 - 50483554
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    |||||||||||| || ||| ||||||||||| ||| | | ||||||||||| |||||||||| |||||||||||    
T  50483627 taattaatgataatgtgactcacttaatggtgggatcgaatatctattttacgtgtctatctgtctccaaattg 50483554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 33247201 - 33247093
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||| ||||| ||| |||||| |||||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  ||||||    
T  33247201 taattaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 33247102  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  33247101 gagaggatc 33247093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 39862521 - 39862629
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    ||||||||||| |||| || || ||| || |||||| ||  ||||||||| |||||||||||||||| || |||   | ||| |||||||||||||||||    
T  39862521 taattaatgatggtggaactcatttagtgataggacacaccatctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatg 39862620  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  39862621 gagaggatc 39862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 33262623 - 33262557
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 501  Q
    ||||||||||| |||||||| | ||| |||||||| |||  ||||||||| ||||||||||||||||    
T  33262623 taattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctctctc 33262557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 1015925 - 1015852
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| ||||||||||| ||||| | |||||||  |  |||||| |||||||||||||||| ||||||    
T  1015925 taattaatgatggtgggacccacctaatgatgggacccaccacttattttttgtgtctatctctctctaaattg 1015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 435 - 543
Target Start/End: Complemental strand, 12312547 - 12312438
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatcta-ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaat 533  Q
    |||||||||||  ||||||||||||| |||||||| |||  ||||| |||| | ||||||||||||||||| |||   |  ||||||||||||  |||||    
T  12312547 taattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaacttgcaaaactccatttattttgccaaat 12312448  T
Q  534 gaagaggatc 543  Q
    | ||||||||    
T  12312447 ggagaggatc 12312438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 46804635 - 46804671
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacc 471  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46804635 taattaatgatagttggacccacttaatggtaggacc 46804671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 12241479 - 12241441
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggaccca 473  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  12241479 taattaatgatggtgggacccacttagtggtaggaccca 12241441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 38079791 - 38079725
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 501  Q
    ||||||||||| |||| | ||||||| | ||||||||||  ||||||||  ||||||||||||||||    
T  38079791 taattaatgatggtggaatccacttagtagtaggacccaccatctatttcttgtgtctatctctctc 38079725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 5817976 - 5818013
Alignment:
Q  472 cattatctattttatgtgtctatctctctccaaattgt 509  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5817976 cattatctcttttttgtgtctatctctctccaaattgt 5818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 36003300 - 36003216
Alignment:
Q  452 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 537  Q
    ||||||||||||  | |||||| ||| |||||| ||| | |||||||||||||||||  ||||| ||||||||||  |||||||||    
T  36003300 acccacttaatgacatgacccaatatttattttttgtatttatctctctccaaattgcatactt-catttattttgacaaatgaag 36003216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 37002322 - 37002249
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||||||| |  ||||| |||  |  |||||| ||||||||||||| |||||||||    
T  37002322 taattaatgatggtgggacccacttagtaataggatccaccacttattttttgtgtctatctctttccaaattg 37002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 42010121 - 42010194
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||| |||||||||| ||| || ||||||||   |  |||||| ||| |||||||||||||||||||    
T  42010121 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtatctatctctctccaaattg 42010194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 8e-18; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 58684 - 58774
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||||  ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  58684 taattaatgatgatggaacccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 58774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 436 - 526
Target Start/End: Original strand, 70796 - 70885
Alignment:
Q  436 aattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 526  Q
    |||||||||| |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||||  || |||||||||||||    
T  70796 aattaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaattgcata-ttccatttatttt 70885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 7151 - 7220
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| ||||||||||| ||||||||||  ||||||||| |||||||||||||||||||    
T  7151 taattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctctctccaa 7220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 29640 - 29567
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 508  Q
    ||||||||||||||||||| ||| ||||| ||||||| |||| ||||||||||| |||||||||||| ||||||    
T  29640 taattaatgatagtgggactcacgtaatgctaggacctattacctattttatgtctctatctctctctaaattg 29567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 208067 - 208175
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 534  Q
    |||||||||||  ||||||||||||| ||||||||||||  ||||||||| ||||| ||||||||||||| |||   |  ||||||||||||  ||||||    
T  208067 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatg 208166  T
Q  535 aagaggatc 543  Q
     ||||||||    
T  208167 gagaggatc 208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 16468 - 16399
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    |||||||||||  ||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  16468 taattaatgatgatgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaa 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 9272 - 9203
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 504  Q
    ||||||||||| |||| | ||||||| |||| |||||||  ||||||||| |||||||||||||||||||    
T  9272 taattaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaa 9203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 17377 - 17311
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 501  Q
    ||||||||||| |||||||||||||| || |||||||||  |  |||||| ||||||||||||||||    
T  17377 taattaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctctctc 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 22513 - 22450
Alignment:
Q  435 taattaatgatagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 498  Q
    |||||||| || |||| || |||||| |||||||| ||| |||||||||| |||||||||||||    
T  22513 taattaattattgtggaactcacttagtggtaggatccactatctattttttgtgtctatctct 22450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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