View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0895_high_11 (Length: 319)
Name: NF0895_high_11
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_high_11 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 85 - 319
Target Start/End: Original strand, 43568473 - 43568713
Alignment:
| Q |
85 |
ctatcagcatcatcatctccaattcaaacccaagacaacaagaatcactttcccttacaaaccaaaatgccaa------caacaaaaacaacccaaatcc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43568473 |
ctatcagcatcatcatctccaattcaaaccgaagacaacaagaatcactttcccttacaaaccaaaatgccaacaccaacaacaaaaacaacccaaatcc |
43568572 |
T |
|
| Q |
179 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgagttctagaagtttctagaaaagccgacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43568573 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
43568672 |
T |
|
| Q |
279 |
acccataccgcggttcccgccttctcctccttgataatcct |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43568673 |
acccattccgcggttcccgccttctcctccttgataatcct |
43568713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 43568407 - 43568437
Alignment:
| Q |
13 |
aagaatgtggatggtcctatctccctctctt |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43568407 |
aagaatgtggatggtcctatctccctctctt |
43568437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 667 times since January 2019
Visitors: 6718