View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0895_high_16 (Length: 210)

Name: NF0895_high_16
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0895_high_16
NF0895_high_16
[»] chr4 (25 HSPs)
chr4 (170-210)||(18872705-18872745)
chr4 (175-210)||(32899227-32899262)
chr4 (178-210)||(30523760-30523792)
chr4 (179-210)||(20455190-20455221)
chr4 (179-210)||(21265217-21265248)
chr4 (175-206)||(32898971-32899002)
chr4 (180-210)||(4415963-4415993)
chr4 (179-209)||(39797431-39797461)
chr4 (180-210)||(46949990-46950020)
chr4 (181-210)||(28501395-28501424)
chr4 (181-210)||(29508597-29508626)
chr4 (177-210)||(41191637-41191670)
chr4 (181-210)||(49793090-49793119)
chr4 (177-206)||(55562860-55562889)
chr4 (181-210)||(56432517-56432546)
chr4 (178-210)||(4035821-4035853)
chr4 (182-210)||(7698478-7698506)
chr4 (182-210)||(25124255-25124283)
chr4 (182-210)||(29520173-29520201)
chr4 (182-210)||(31937076-31937104)
chr4 (170-210)||(38027402-38027442)
chr4 (182-210)||(39670995-39671023)
chr4 (182-210)||(49373702-49373730)
chr4 (182-210)||(53564365-53564393)
chr4 (182-210)||(55563136-55563164)
[»] chr5 (18 HSPs)
chr5 (176-210)||(7940446-7940480)
chr5 (173-204)||(4976019-4976050)
chr5 (180-210)||(3028011-3028041)
chr5 (180-210)||(23260147-23260177)
chr5 (179-209)||(32964130-32964160)
chr5 (181-210)||(8949811-8949840)
chr5 (181-210)||(14435829-14435858)
chr5 (181-210)||(20142268-20142297)
chr5 (169-210)||(27873354-27873395)
chr5 (173-206)||(39121420-39121453)
chr5 (182-210)||(4976299-4976327)
chr5 (178-210)||(14436072-14436104)
chr5 (179-207)||(14571284-14571312)
chr5 (182-210)||(19571948-19571976)
chr5 (174-210)||(22527684-22527720)
chr5 (182-210)||(23286483-23286511)
chr5 (180-208)||(39971012-39971040)
chr5 (182-210)||(43060420-43060448)
[»] chr7 (18 HSPs)
chr7 (169-210)||(42541868-42541909)
chr7 (174-210)||(23109337-23109373)
chr7 (174-209)||(6799556-6799591)
chr7 (179-210)||(27813493-27813524)
chr7 (176-207)||(30895554-30895585)
chr7 (175-210)||(33381582-33381617)
chr7 (178-209)||(35888308-35888339)
chr7 (180-210)||(2290025-2290055)
chr7 (179-209)||(46415015-46415045)
chr7 (181-210)||(1574718-1574747)
chr7 (181-210)||(34012526-34012555)
chr7 (171-208)||(34979088-34979125)
chr7 (179-207)||(7400126-7400154)
chr7 (172-204)||(23920006-23920038)
chr7 (178-210)||(29286046-29286078)
chr7 (182-210)||(31581677-31581705)
chr7 (182-210)||(32118172-32118200)
chr7 (178-206)||(46148704-46148732)
[»] chr1 (20 HSPs)
chr1 (176-209)||(28886114-28886147)
chr1 (174-210)||(25227296-25227332)
chr1 (174-210)||(28885834-28885870)
chr1 (171-210)||(42276170-42276209)
chr1 (180-210)||(9413334-9413364)
chr1 (180-210)||(25509207-25509237)
chr1 (178-208)||(38613477-38613507)
chr1 (181-210)||(5765999-5766028)
chr1 (181-210)||(7763758-7763787)
chr1 (181-210)||(17483732-17483761)
chr1 (181-210)||(25283870-25283899)
chr1 (181-210)||(27037268-27037297)
chr1 (182-210)||(4280135-4280163)
chr1 (182-210)||(21631116-21631144)
chr1 (179-207)||(22567063-22567091)
chr1 (182-210)||(27037539-27037567)
chr1 (182-210)||(38613745-38613773)
chr1 (182-210)||(41317593-41317621)
chr1 (182-210)||(43456630-43456658)
chr1 (181-209)||(50937778-50937806)
[»] chr8 (17 HSPs)
chr8 (174-210)||(18111984-18112020)
chr8 (179-210)||(2152249-2152280)
chr8 (175-206)||(5162578-5162609)
chr8 (180-210)||(12802609-12802639)
chr8 (180-210)||(23487062-23487092)
chr8 (181-210)||(23688174-23688203)
chr8 (181-210)||(44580615-44580644)
chr8 (182-210)||(5162304-5162332)
chr8 (182-210)||(6050564-6050592)
chr8 (182-210)||(17069853-17069881)
chr8 (182-210)||(17578392-17578420)
chr8 (178-210)||(17856785-17856817)
chr8 (182-210)||(18641389-18641417)
chr8 (181-209)||(36408414-36408442)
chr8 (181-209)||(40784890-40784918)
chr8 (182-210)||(44888680-44888708)
chr8 (182-210)||(45283801-45283829)
[»] chr6 (13 HSPs)
chr6 (178-210)||(23604456-23604488)
chr6 (180-210)||(402630-402660)
chr6 (176-210)||(16122523-16122557)
chr6 (176-210)||(34915552-34915586)
chr6 (181-210)||(13321335-13321364)
chr6 (181-210)||(13901640-13901669)
chr6 (181-210)||(15498628-15498657)
chr6 (181-210)||(25045652-25045681)
chr6 (182-210)||(2090658-2090686)
chr6 (179-207)||(9341835-9341863)
chr6 (182-210)||(13866593-13866621)
chr6 (173-209)||(23397870-23397906)
chr6 (182-210)||(31091445-31091473)
[»] scaffold0011 (1 HSPs)
scaffold0011 (175-210)||(19691-19726)
[»] chr3 (29 HSPs)
chr3 (175-210)||(6784732-6784767)
chr3 (171-210)||(12906422-12906461)
chr3 (176-210)||(14758832-14758866)
chr3 (180-210)||(28875260-28875290)
chr3 (176-210)||(43868097-43868131)
chr3 (176-210)||(46845501-46845535)
chr3 (180-210)||(50433398-50433428)
chr3 (174-208)||(53271862-53271896)
chr3 (181-210)||(4759360-4759389)
chr3 (181-210)||(10015798-10015827)
chr3 (177-206)||(12906146-12906175)
chr3 (171-208)||(17589887-17589924)
chr3 (181-210)||(19897845-19897874)
chr3 (181-210)||(24087344-24087373)
chr3 (173-210)||(35868092-35868129)
chr3 (181-210)||(41392889-41392918)
chr3 (181-210)||(42801520-42801549)
chr3 (181-210)||(48902717-48902746)
chr3 (181-210)||(48904272-48904301)
chr3 (182-210)||(4759088-4759116)
chr3 (182-210)||(8321925-8321953)
chr3 (171-207)||(10044831-10044867)
chr3 (182-210)||(15996782-15996810)
chr3 (181-209)||(17699041-17699069)
chr3 (174-210)||(20621417-20621453)
chr3 (171-207)||(24813591-24813627)
chr3 (173-209)||(33976494-33976530)
chr3 (178-210)||(45404371-45404403)
chr3 (182-210)||(45513646-45513674)
[»] chr2 (20 HSPs)
chr2 (175-210)||(2060309-2060344)
chr2 (179-210)||(2199975-2200006)
chr2 (179-210)||(23083512-23083543)
chr2 (179-210)||(41422509-41422540)
chr2 (176-210)||(26322302-26322336)
chr2 (180-210)||(31751067-31751097)
chr2 (181-210)||(12890217-12890246)
chr2 (181-210)||(41494631-41494660)
chr2 (182-210)||(2200249-2200277)
chr2 (182-210)||(3095299-3095327)
chr2 (182-210)||(7116308-7116336)
chr2 (182-210)||(8912883-8912911)
chr2 (182-210)||(13215829-13215857)
chr2 (182-210)||(18374713-18374741)
chr2 (182-210)||(24345417-24345445)
chr2 (182-210)||(24345687-24345715)
chr2 (182-210)||(28566151-28566179)
chr2 (181-209)||(29830764-29830792)
chr2 (174-210)||(30857930-30857966)
chr2 (178-210)||(41450512-41450544)
[»] scaffold0029 (1 HSPs)
scaffold0029 (172-210)||(51691-51729)
[»] scaffold0020 (1 HSPs)
scaffold0020 (176-210)||(164208-164242)
[»] scaffold0012 (1 HSPs)
scaffold0012 (172-210)||(47630-47668)
[»] scaffold0237 (1 HSPs)
scaffold0237 (181-210)||(6618-6647)
[»] scaffold0163 (1 HSPs)
scaffold0163 (181-210)||(1455-1484)
[»] scaffold0674 (1 HSPs)
scaffold0674 (182-210)||(5151-5179)
[»] scaffold0549 (1 HSPs)
scaffold0549 (182-210)||(10191-10219)
[»] scaffold0240 (2 HSPs)
scaffold0240 (182-210)||(18497-18525)
scaffold0240 (182-210)||(18765-18793)
[»] scaffold0161 (1 HSPs)
scaffold0161 (182-210)||(3438-3466)
[»] scaffold0107 (1 HSPs)
scaffold0107 (182-210)||(48654-48682)


Alignment Details
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 18872705 - 18872745
Alignment:
Q  170 caaaataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  18872705 caaaatagaatatactacctccgtccctaattataagaccc 18872745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 32899262 - 32899227
Alignment:
Q  175 taaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  32899262 taaaatatactacctccgtccctaattataagaccc 32899227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 30523760 - 30523792
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||||    
T  30523760 aatatactacctccgtccctaattataagaccc 30523792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 20455221 - 20455190
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  20455221 atatactacctccgtccctaattataagaccc 20455190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 21265217 - 21265248
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  21265217 atatactacctccgtccctaattataagaccc 21265248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 32898971 - 32899002
Alignment:
Q  175 taaaatatactacctccgtccctaattataag 206  Q
    ||||||||||||||||||||||||||||||||    
T  32898971 taaaatatactacctccgtccctaattataag 32899002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 4415963 - 4415993
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  4415963 tatactacctccgtccctaattataagaccc 4415993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 39797431 - 39797461
Alignment:
Q  179 atatactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||||    
T  39797431 atatactacctccgtccctaattataagacc 39797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 46949990 - 46950020
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  46949990 tatactacctccgtccctaattataagaccc 46950020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 28501424 - 28501395
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  28501424 atactacctccgtccctaattataagaccc 28501395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 29508597 - 29508626
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  29508597 atactacctccgtccctaattataagaccc 29508626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 41191670 - 41191637
Alignment:
Q  177 aaatatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||| |||||||||||||||    
T  41191670 aaatatactacctccgtctctaattataagaccc 41191637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 49793090 - 49793119
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  49793090 atactacctccgtccctaattataagaccc 49793119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 55562860 - 55562889
Alignment:
Q  177 aaatatactacctccgtccctaattataag 206  Q
    ||||||||||||||||||||||||||||||    
T  55562860 aaatatactacctccgtccctaattataag 55562889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 56432517 - 56432546
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  56432517 atactacctccgtccctaattataagaccc 56432546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 4035821 - 4035853
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||| ||||||||||||||||||||||||    
T  4035821 aatatactccctccgtccctaattataagaccc 4035853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 7698506 - 7698478
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  7698506 tactacctccgtccctaattataagaccc 7698478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 25124283 - 25124255
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  25124283 tactacctccgtccctaattataagaccc 25124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 29520201 - 29520173
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagaccc 29520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 31937076 - 31937104
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  31937076 tactacctccgtccctaattataagaccc 31937104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 38027442 - 38027402
Alignment:
Q  170 caaaataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||||||| |||||||||| |||||||||||| |||||    
T  38027442 caaaataaaatgtactacctccatccctaattatatgaccc 38027402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 39671023 - 39670995
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  39671023 tactacctccgtccctaattataagaccc 39670995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 49373730 - 49373702
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  49373730 tactacctccgtccctaattataagaccc 49373702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 53564393 - 53564365
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  53564393 tactacctccgtccctaattataagaccc 53564365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 55563164 - 55563136
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  55563164 tactacctccgtccctaattataagaccc 55563136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 7940446 - 7940480
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||||||    
T  7940446 aaaatatactacctccgtccctaattataagaccc 7940480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 204
Target Start/End: Original strand, 4976019 - 4976050
Alignment:
Q  173 aataaaatatactacctccgtccctaattata 204  Q
    ||||||||||||||||||||||||||||||||    
T  4976019 aataaaatatactacctccgtccctaattata 4976050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 3028011 - 3028041
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  3028011 tatactacctccgtccctaattataagaccc 3028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 23260177 - 23260147
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  23260177 tatactacctccgtccctaattataagaccc 23260147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 32964130 - 32964160
Alignment:
Q  179 atatactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||||    
T  32964130 atatactacctccgtccctaattataagacc 32964160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 8949811 - 8949840
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  8949811 atactacctccgtccctaattataagaccc 8949840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 14435829 - 14435858
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  14435829 atactacctccgtccctaattataagaccc 14435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 20142297 - 20142268
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  20142297 atactacctccgtccctaattataagaccc 20142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 27873395 - 27873354
Alignment:
Q  169 tcaaaataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  27873395 tcaaaataccatatactatctccgtccctaattataagaccc 27873354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 39121420 - 39121453
Alignment:
Q  173 aataaaatatactacctccgtccctaattataag 206  Q
    |||| |||||||||||||||||||||||||||||    
T  39121420 aatagaatatactacctccgtccctaattataag 39121453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 4976327 - 4976299
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  4976327 tactacctccgtccctaattataagaccc 4976299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 14436104 - 14436072
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||| |||||    
T  14436104 aatatactacctccgtccctaattataggaccc 14436072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 14571284 - 14571312
Alignment:
Q  179 atatactacctccgtccctaattataaga 207  Q
    |||||||||||||||||||||||||||||    
T  14571284 atatactacctccgtccctaattataaga 14571312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 19571976 - 19571948
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  19571976 tactacctccgtccctaattataagaccc 19571948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 22527684 - 22527720
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  22527684 ataatatatactccctccgtccctaattataagaccc 22527720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 23286511 - 23286483
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagaccc 23286483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 39971012 - 39971040
Alignment:
Q  180 tatactacctccgtccctaattataagac 208  Q
    |||||||||||||||||||||||||||||    
T  39971012 tatactacctccgtccctaattataagac 39971040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 43060448 - 43060420
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagaccc 43060420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 42541909 - 42541868
Alignment:
Q  169 tcaaaataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  42541909 tcaaaattaaaaatactacctccgtccctaattataagaccc 42541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 23109373 - 23109337
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23109373 ataaaatatactacctccgtccctaattataggaccc 23109337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 6799591 - 6799556
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagacc 209  Q
    ||||| ||||||||||||||||||||||||||||||    
T  6799591 ataaattatactacctccgtccctaattataagacc 6799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 27813493 - 27813524
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  27813493 atatactacctccgtccctaattataagaccc 27813524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 30895554 - 30895585
Alignment:
Q  176 aaaatatactacctccgtccctaattataaga 207  Q
    ||||||||||||||||||||||||||||||||    
T  30895554 aaaatatactacctccgtccctaattataaga 30895585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 33381617 - 33381582
Alignment:
Q  175 taaaatatactacctccgtccctaattataagaccc 210  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33381617 taaaaaatactacctccgtccctaattataagaccc 33381582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 35888308 - 35888339
Alignment:
Q  178 aatatactacctccgtccctaattataagacc 209  Q
    ||||||||||||||||||||||||||||||||    
T  35888308 aatatactacctccgtccctaattataagacc 35888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 2290055 - 2290025
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  2290055 tatactacctccgtccctaattataagaccc 2290025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 46415045 - 46415015
Alignment:
Q  179 atatactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||||    
T  46415045 atatactacctccgtccctaattataagacc 46415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 1574718 - 1574747
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  1574718 atactacctccgtccctaattataagaccc 1574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 34012555 - 34012526
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  34012555 atactacctccgtccctaattataagaccc 34012526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 34979125 - 34979088
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataagac 208  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  34979125 aaaataaattatactccctccgtccctaattataagac 34979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 7400126 - 7400154
Alignment:
Q  179 atatactacctccgtccctaattataaga 207  Q
    |||||||||||||||||||||||||||||    
T  7400126 atatactacctccgtccctaattataaga 7400154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 23920038 - 23920006
Alignment:
Q  172 aaataaaatatactacctccgtccctaattata 204  Q
    ||||||||| |||||||||||||||||||||||    
T  23920038 aaataaaatgtactacctccgtccctaattata 23920006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 29286078 - 29286046
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||| ||||||||||||||||||||||||    
T  29286078 aatatactccctccgtccctaattataagaccc 29286046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 31581677 - 31581705
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  31581677 tactacctccgtccctaattataagaccc 31581705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 32118200 - 32118172
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  32118200 tactacctccgtccctaattataagaccc 32118172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 46148732 - 46148704
Alignment:
Q  178 aatatactacctccgtccctaattataag 206  Q
    |||||||||||||||||||||||||||||    
T  46148732 aatatactacctccgtccctaattataag 46148704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 28886147 - 28886114
Alignment:
Q  176 aaaatatactacctccgtccctaattataagacc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  28886147 aaaatatactacctccgtccctaattataagacc 28886114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 25227296 - 25227332
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||| |||||||||||||||||||||||||||||    
T  25227296 ataaaatgtactacctccgtccctaattataagaccc 25227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 28885834 - 28885870
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28885834 ataacatatactacctccgtccctaattataagaccc 28885870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 42276209 - 42276170
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  42276209 aaaaaaaaacatactacctccgtccctaattataagaccc 42276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 9413364 - 9413334
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  9413364 tatactacctccgtccctaattataagaccc 9413334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 25509207 - 25509237
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  25509207 tatactacctccgtccctaattataagaccc 25509237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 38613477 - 38613507
Alignment:
Q  178 aatatactacctccgtccctaattataagac 208  Q
    |||||||||||||||||||||||||||||||    
T  38613477 aatatactacctccgtccctaattataagac 38613507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 5766028 - 5765999
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  5766028 atactacctccgtccctaattataagaccc 5765999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 7763787 - 7763758
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  7763787 atactacctccgtccctaattataagaccc 7763758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 17483732 - 17483761
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  17483732 atactacctccgtccctaattataagaccc 17483761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 25283870 - 25283899
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  25283870 atactacctccgtccctaattataagaccc 25283899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 27037268 - 27037297
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  27037268 atactacctccgtccctaattataagaccc 27037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 4280163 - 4280135
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  4280163 tactacctccgtccctaattataagaccc 4280135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 21631144 - 21631116
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  21631144 tactacctccgtccctaattataagaccc 21631116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 22567063 - 22567091
Alignment:
Q  179 atatactacctccgtccctaattataaga 207  Q
    |||||||||||||||||||||||||||||    
T  22567063 atatactacctccgtccctaattataaga 22567091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 27037567 - 27037539
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  27037567 tactacctccgtccctaattataagaccc 27037539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 38613773 - 38613745
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  38613773 tactacctccgtccctaattataagaccc 38613745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 41317593 - 41317621
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  41317593 tactacctccgtccctaattataagaccc 41317621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 43456658 - 43456630
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  43456658 tactacctccgtccctaattataagaccc 43456630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 50937778 - 50937806
Alignment:
Q  181 atactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||    
T  50937778 atactacctccgtccctaattataagacc 50937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18112020 - 18111984
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||||    
T  18112020 ataacatatactacctccgtccctaattataagaccc 18111984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 2152280 - 2152249
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  2152280 atatactacctccgtccctaattataagaccc 2152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 5162609 - 5162578
Alignment:
Q  175 taaaatatactacctccgtccctaattataag 206  Q
    ||||||||||||||||||||||||||||||||    
T  5162609 taaaatatactacctccgtccctaattataag 5162578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 12802609 - 12802639
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  12802609 tatactacctccgtccctaattataagaccc 12802639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 23487062 - 23487092
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  23487062 tatactacctccgtccctaattataagaccc 23487092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 23688203 - 23688174
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  23688203 atactacctccgtccctaattataagaccc 23688174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 44580615 - 44580644
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  44580615 atactacctccgtccctaattataagaccc 44580644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 5162304 - 5162332
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagaccc 5162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 6050592 - 6050564
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  6050592 tactacctccgtccctaattataagaccc 6050564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 17069881 - 17069853
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  17069881 tactacctccgtccctaattataagaccc 17069853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 17578392 - 17578420
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  17578392 tactacctccgtccctaattataagaccc 17578420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 17856817 - 17856785
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||| ||||||||||||||||||||||||    
T  17856817 aatatactccctccgtccctaattataagaccc 17856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 18641417 - 18641389
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  18641417 tactacctccgtccctaattataagaccc 18641389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 36408414 - 36408442
Alignment:
Q  181 atactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||    
T  36408414 atactacctccgtccctaattataagacc 36408442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 40784890 - 40784918
Alignment:
Q  181 atactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||    
T  40784890 atactacctccgtccctaattataagacc 40784918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 44888680 - 44888708
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  44888680 tactacctccgtccctaattataagaccc 44888708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 45283829 - 45283801
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  45283829 tactacctccgtccctaattataagaccc 45283801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 23604456 - 23604488
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||||    
T  23604456 aatatactacctccgtccctaattataagaccc 23604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 402660 - 402630
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  402660 tatactacctccgtccctaattataagaccc 402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 16122557 - 16122523
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  16122557 aaaaaatactacctccgtccctaattataagaccc 16122523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 34915586 - 34915552
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  34915586 aaaaaatactacctccgtccctaattataagaccc 34915552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 13321364 - 13321335
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  13321364 atactacctccgtccctaattataagaccc 13321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 13901640 - 13901669
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  13901640 atactacctccgtccctaattataagaccc 13901669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 15498628 - 15498657
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  15498628 atactacctccgtccctaattataagaccc 15498657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 25045681 - 25045652
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  25045681 atactacctccgtccctaattataagaccc 25045652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 2090658 - 2090686
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  2090658 tactacctccgtccctaattataagaccc 2090686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 9341835 - 9341863
Alignment:
Q  179 atatactacctccgtccctaattataaga 207  Q
    |||||||||||||||||||||||||||||    
T  9341835 atatactacctccgtccctaattataaga 9341863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 13866593 - 13866621
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  13866593 tactacctccgtccctaattataagaccc 13866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 23397870 - 23397906
Alignment:
Q  173 aataaaatatactacctccgtccctaattataagacc 209  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  23397870 aataaaaaatactccctccgtccctaattataagacc 23397906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 31091445 - 31091473
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  31091445 tactacctccgtccctaattataagaccc 31091473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 19691 - 19726
Alignment:
Q  175 taaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19691 taaaatatactacatccgtccctaattataagaccc 19726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 6784767 - 6784732
Alignment:
Q  175 taaaatatactacctccgtccctaattataagaccc 210  Q
    |||||||||||| |||||||||||||||||||||||    
T  6784767 taaaatatactatctccgtccctaattataagaccc 6784732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 12906461 - 12906422
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  12906461 aaaaaaaaacatactacctccgtccctaattataagaccc 12906422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 14758832 - 14758866
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||||||| ||||||||||||||||||||||||||    
T  14758832 aaaatatattacctccgtccctaattataagaccc 14758866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 28875290 - 28875260
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  28875290 tatactacctccgtccctaattataagaccc 28875260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 43868097 - 43868131
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||||||||| ||||||||||||||||||||||||    
T  43868097 aaaatatactccctccgtccctaattataagaccc 43868131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 46845535 - 46845501
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  46845535 aaaagatactacctccgtccctaattataagaccc 46845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 50433428 - 50433398
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  50433428 tatactacctccgtccctaattataagaccc 50433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 53271896 - 53271862
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagac 208  Q
    |||||||||||| ||||||||||||||||||||||    
T  53271896 ataaaatatactccctccgtccctaattataagac 53271862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 4759389 - 4759360
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  4759389 atactacctccgtccctaattataagaccc 4759360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 10015827 - 10015798
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  10015827 atactacctccgtccctaattataagaccc 10015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 12906146 - 12906175
Alignment:
Q  177 aaatatactacctccgtccctaattataag 206  Q
    ||||||||||||||||||||||||||||||    
T  12906146 aaatatactacctccgtccctaattataag 12906175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 17589924 - 17589887
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataagac 208  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  17589924 aaaaaaaattatactacctccgtccctaattataagac 17589887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 19897874 - 19897845
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  19897874 atactacctccgtccctaattataagaccc 19897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 24087373 - 24087344
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  24087373 atactacctccgtccctaattataagaccc 24087344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 35868129 - 35868092
Alignment:
Q  173 aataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  35868129 aataaaacatactccctccgtccctaattataagaccc 35868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 41392918 - 41392889
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  41392918 atactacctccgtccctaattataagaccc 41392889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 42801520 - 42801549
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  42801520 atactacctccgtccctaattataagaccc 42801549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 48902746 - 48902717
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  48902746 atactacctccgtccctaattataagaccc 48902717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 48904301 - 48904272
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  48904301 atactacctccgtccctaattataagaccc 48904272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 4759088 - 4759116
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  4759088 tactacctccgtccctaattataagaccc 4759116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 8321925 - 8321953
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagaccc 8321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 10044831 - 10044867
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataaga 207  Q
    |||| |||||||||| |||||||||||||||||||||    
T  10044831 aaaaaaaaatatactccctccgtccctaattataaga 10044867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 15996810 - 15996782
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  15996810 tactacctccgtccctaattataagaccc 15996782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 17699069 - 17699041
Alignment:
Q  181 atactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||    
T  17699069 atactacctccgtccctaattataagacc 17699041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 20621417 - 20621453
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    |||||| |||||||||||||||||||||||| |||||    
T  20621417 ataaaaaatactacctccgtccctaattataggaccc 20621453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 24813591 - 24813627
Alignment:
Q  171 aaaataaaatatactacctccgtccctaattataaga 207  Q
    ||||||||  |||||||||||||||||||||||||||    
T  24813591 aaaataaatgatactacctccgtccctaattataaga 24813627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 33976494 - 33976530
Alignment:
Q  173 aataaaatatactacctccgtccctaattataagacc 209  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  33976494 aataacatatattacctccgtccctaattataagacc 33976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 45404371 - 45404403
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||||| ||||||||||||||||||||||    
T  45404371 aatatactacatccgtccctaattataagaccc 45404403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 45513674 - 45513646
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  45513674 tactacctccgtccctaattataagaccc 45513646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 2060309 - 2060344
Alignment:
Q  175 taaaatatactacctccgtccctaattataagaccc 210  Q
    |||||| |||||||||||||||||||||||||||||    
T  2060309 taaaatgtactacctccgtccctaattataagaccc 2060344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 2199975 - 2200006
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  2199975 atatactacctccgtccctaattataagaccc 2200006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 23083512 - 23083543
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  23083512 atatactacctccgtccctaattataagaccc 23083543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 41422509 - 41422540
Alignment:
Q  179 atatactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||||    
T  41422509 atatactacctccgtccctaattataagaccc 41422540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 26322336 - 26322302
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  26322336 aaaacatactacctccgtccctaattataagaccc 26322302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 31751067 - 31751097
Alignment:
Q  180 tatactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||||    
T  31751067 tatactacctccgtccctaattataagaccc 31751097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 12890246 - 12890217
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  12890246 atactacctccgtccctaattataagaccc 12890217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 41494660 - 41494631
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  41494660 atactacctccgtccctaattataagaccc 41494631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 2200277 - 2200249
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  2200277 tactacctccgtccctaattataagaccc 2200249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 3095299 - 3095327
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  3095299 tactacctccgtccctaattataagaccc 3095327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 7116336 - 7116308
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  7116336 tactacctccgtccctaattataagaccc 7116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 8912911 - 8912883
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagaccc 8912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 13215857 - 13215829
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  13215857 tactacctccgtccctaattataagaccc 13215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 18374741 - 18374713
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  18374741 tactacctccgtccctaattataagaccc 18374713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 24345417 - 24345445
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  24345417 tactacctccgtccctaattataagaccc 24345445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 24345715 - 24345687
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  24345715 tactacctccgtccctaattataagaccc 24345687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 28566151 - 28566179
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  28566151 tactacctccgtccctaattataagaccc 28566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 29830792 - 29830764
Alignment:
Q  181 atactacctccgtccctaattataagacc 209  Q
    |||||||||||||||||||||||||||||    
T  29830792 atactacctccgtccctaattataagacc 29830764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30857930 - 30857966
Alignment:
Q  174 ataaaatatactacctccgtccctaattataagaccc 210  Q
    |||| |||||||||| |||||||||||||||||||||    
T  30857930 ataatatatactacccccgtccctaattataagaccc 30857966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 41450512 - 41450544
Alignment:
Q  178 aatatactacctccgtccctaattataagaccc 210  Q
    |||||||| ||||||||||||||||||||||||    
T  41450512 aatatactccctccgtccctaattataagaccc 41450544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 51729 - 51691
Alignment:
Q  172 aaataaaatatactacctccgtccctaattataagaccc 210  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  51729 aaataacatatactccctccgtccctaattataagaccc 51691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 164208 - 164242
Alignment:
Q  176 aaaatatactacctccgtccctaattataagaccc 210  Q
    |||| ||||||||||||||||||||||||||||||    
T  164208 aaaaaatactacctccgtccctaattataagaccc 164242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 47630 - 47668
Alignment:
Q  172 aaataaaatatactacctccgtccctaattataagaccc 210  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  47630 aaataaattatactccctccgtccctaattataagaccc 47668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 6647 - 6618
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  6647 atactacctccgtccctaattataagaccc 6618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 1484 - 1455
Alignment:
Q  181 atactacctccgtccctaattataagaccc 210  Q
    ||||||||||||||||||||||||||||||    
T  1484 atactacctccgtccctaattataagaccc 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 5151 - 5179
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  5151 tactacctccgtccctaattataagaccc 5179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 10219 - 10191
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  10219 tactacctccgtccctaattataagaccc 10191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 18497 - 18525
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  18497 tactacctccgtccctaattataagaccc 18525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 18793 - 18765
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  18793 tactacctccgtccctaattataagaccc 18765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 3438 - 3466
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagaccc 3466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 48654 - 48682
Alignment:
Q  182 tactacctccgtccctaattataagaccc 210  Q
    |||||||||||||||||||||||||||||    
T  48654 tactacctccgtccctaattataagaccc 48682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 503 times since January 2019
Visitors: 6717