View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0895_high_4 (Length: 465)
Name: NF0895_high_4
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 91 - 352
Target Start/End: Complemental strand, 3721242 - 3720990
Alignment:
| Q |
91 |
aggatatgattcccagttacttggccttgtgtcaatcaccgccagtacaacatttggtgcatctccatcatagataccataacagtgcattgtttctctt |
190 |
Q |
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| T |
3721242 |
aggatatgattgccagttacttggacttgtgtcaatcgacgccagtacaaaatttggtgcatctccatcatagata-----acagtgcattgtttctctt |
3721148 |
T |
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| Q |
191 |
aaatatatgaagcaaataacttaattaattaaataaagttttaatttgtgtaagtttaaagagaggttgaaatgaatggcgtcacactatccaccacaaa |
290 |
Q |
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| T |
3721147 |
aaataacttatttgaa---cttatttaattaaatcaagttttaatttgtgtaagtttaaagagaggttgaaatgaatggcgtcacactatccaccacaaa |
3721051 |
T |
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| Q |
291 |
gtaaaatactagaaaaaaggaaatgaaatggaatgagaatccatagttccctgtcacaatca |
352 |
Q |
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| T |
3721050 |
gt-aaatactagaaaaaaggaaatgaaatggaatgagaatccatagttccctgtcacaatca |
3720990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 3720961 - 3720885
Alignment:
| Q |
381 |
aaattccactttctcgatcgcattgctgtcgccataaccagattctgtagatcgcgcttccacgatgatgatgtcca |
457 |
Q |
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| T |
3720961 |
aaattccactttctcgatcgcattgctgtcgccataaccagattctgtagatcgcgcttccacgatgatgatgtcca |
3720885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 8481925 - 8481953
Alignment:
| Q |
5 |
cgagttaatatatctcatttttgattgtt |
33 |
Q |
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| T |
8481925 |
cgagttaatatatctcatttttgattgtt |
8481953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 29967480 - 29967452
Alignment:
| Q |
5 |
cgagttaatatatctcatttttgattgtt |
33 |
Q |
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| T |
29967480 |
cgagttaatatatctcatttttgattgtt |
29967452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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