View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0895_low_10 (Length: 431)
Name: NF0895_low_10
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_10 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 57 - 427
Target Start/End: Original strand, 39984552 - 39984922
Alignment:
| Q |
57 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
156 |
Q |
| |
|
||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
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|
| T |
39984552 |
catcatcatcaccgggagcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatctt |
39984651 |
T |
|
| Q |
157 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
256 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
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|
| T |
39984652 |
gtcctcaaactcatcagcctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagc |
39984751 |
T |
|
| Q |
257 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcct |
356 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
39984752 |
tttcctgcaattttttcatccttaatggtgttcctcatgttgtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatctt |
39984851 |
T |
|
| Q |
357 |
cggacttgtacttctctgcctcttgaaccatcttctcaatatcttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
39984852 |
ccgacttgtacttctctgcctcttgaaccatcttctcaatgtcttcctttgaaagtctacccttgtcattg |
39984922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 427
Target Start/End: Complemental strand, 8018634 - 8018305
Alignment:
| Q |
98 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
197 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | || || | |||||||||||| || ||||||||||| |||||||| | ||||||| || | |
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|
| T |
8018634 |
ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca |
8018535 |
T |
|
| Q |
198 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
297 |
Q |
| |
|
|||||| || ||||| ||||| | || ||||||||||| ||||| || | ||||||| ||||||| || || |||||||||||||||||||| |
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|
| T |
8018534 |
accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt |
8018435 |
T |
|
| Q |
298 |
gtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaata |
397 |
Q |
| |
|
||| || || |||||||| |||||||| || || |||||||| || ||||| || || || | |||||| || ||||| || | ||||||||||||||| |
|
|
| T |
8018434 |
gtaagcgtagttttccaaagcattctttgcatcaaccttctttttgtgttcctcgtcttcagccttgtatttttctgcttcctcaaccatcttctcaatt |
8018335 |
T |
|
| Q |
398 |
tcttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
||||||||||| | ||||| ||||||||| |
|
|
| T |
8018334 |
tcttccttagacaacctacctttgtcattg |
8018305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 405
Target Start/End: Original strand, 8101614 - 8101921
Alignment:
| Q |
98 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
197 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||| | || | |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |
|
|
| T |
8101614 |
ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa |
8101713 |
T |
|
| Q |
198 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
297 |
Q |
| |
|
|||| || || || ||||||| | |||||||||| ||||||||| | ||||||| ||||| || || ||||| ||||| |||||||| |
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|
| T |
8101714 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctcctgaaagctttgaactgatcttctcgtctttaatggtgtttctcatgtt |
8101813 |
T |
|
| Q |
298 |
gtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaata |
397 |
Q |
| |
|
||||||||| || ||||| | ||||| ||||| ||||||||||| || || ||||| || |||||| |||||||| ||||| ||||||||||| || |
|
|
| T |
8101814 |
gtatgcatagttctccaaggagttctttgcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgcttcttggaccatcttctcgatt |
8101913 |
T |
|
| Q |
398 |
tcttcctt |
405 |
Q |
| |
|
|||||||| |
|
|
| T |
8101914 |
tcttcctt |
8101921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 427
Target Start/End: Complemental strand, 17649568 - 17649209
Alignment:
| Q |
57 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
156 |
Q |
| |
|
||||||||||| ||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |
|
|
| T |
17649568 |
catcatcatcacctggagcggcatccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatctt |
17649469 |
T |
|
| Q |
157 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
256 |
Q |
| |
|
||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
17649468 |
atcctcaaactcatctgcctattcaagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagc |
17649373 |
T |
|
| Q |
257 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcct |
356 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||||||||| ||| |||||||||||||||||| ||| || || |||||| |||||||| | |
|
|
| T |
17649372 |
tttcatgcaatcttttcatcattaatggtgttcctcatgttgt----atagttttccaatgcattcttgtccttaac---ctacttatgctcttcatctt |
17649280 |
T |
|
| Q |
357 |
cggacttgtacttctctgcctcttgaaccatcttctcaatatcttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
17649279 |
ccgacttgtacttctctgcctctcgaaccatcttctcaatgttttcctttgaaagtctacccttgtcattg |
17649209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 81 - 427
Target Start/End: Complemental strand, 17706911 - 17706575
Alignment:
| Q |
81 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
180 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17706911 |
ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc |
17706812 |
T |
|
| Q |
181 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
280 |
Q |
| |
|
|||||| || || ||||||||| |||||| ||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
17706811 |
aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaattttctt---gtctttggaatcaagctttcctgcaatcttttcatcctta |
17706715 |
T |
|
| Q |
281 |
attgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctctt |
380 |
Q |
| |
|
|| |||| |||| |||||||| | ||||||| |||||||||||||| |||| ||| ||| |||| | | || || ||||||||||| |||||| |
|
|
| T |
17706714 |
atggtgtccctcgtgttgtat----agttttccatagcattcttggcctcaacctcctt---atgctcttaaacttctgagttgtacttctccgcctctc |
17706622 |
T |
|
| Q |
381 |
gaaccatcttctcaatatcttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
17706621 |
gaactatcttctcaatgacttcctttgaaagtcttcccttgtcattg |
17706575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 17722122 - 17722080
Alignment:
| Q |
312 |
ccaatgcattcttggcctcgaccttcttcttatgttcttcatc |
354 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
17722122 |
ccaatgcattcttggcctcaacctccttcttatgctcttcatc |
17722080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 427
Target Start/End: Complemental strand, 23588953 - 23588625
Alignment:
| Q |
99 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
198 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | | |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
|
|
| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
199 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
298 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | | ||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
299 |
tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaatat |
398 |
Q |
| |
|
|| ||||| || || | ||||||||||||||| || ||||| || || || || ||||| ||||||||||| || || || || |||||||||||||| | |
|
|
| T |
23588753 |
taggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgcaccatcttctcaattt |
23588654 |
T |
|
| Q |
399 |
cttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
||||||| || || ||||||||||||||| |
|
|
| T |
23588653 |
cttccttggagagcctacccttgtcattg |
23588625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 99 - 427
Target Start/End: Complemental strand, 23597805 - 23597477
Alignment:
| Q |
99 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
198 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | || |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
|
|
| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23597706 |
T |
|
| Q |
199 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
298 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | ||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
23597705 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagccgacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23597606 |
T |
|
| Q |
299 |
tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgcctcttgaaccatcttctcaatat |
398 |
Q |
| |
|
|| ||||| || || | ||||| |||||||| |||||| | || || || ||||||||||| |||||||| || || || || ||||| |||||||| | |
|
|
| T |
23597605 |
taggcatagttctcaagcgcatttttggcctccaccttccttttgtgctcctcatcctcggatttgtacttttccgcttcctgcaccattttctcaatgt |
23597506 |
T |
|
| Q |
399 |
cttccttagaaagtctacccttgtcattg |
427 |
Q |
| |
|
| ||||| || || ||||||||||||||| |
|
|
| T |
23597505 |
cctccttggagagcctacccttgtcattg |
23597477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 405
Target Start/End: Original strand, 54395536 - 54395677
Alignment:
| Q |
264 |
caatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggactt |
363 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || || |||||||| || | || |||||| ||||| || |||||||| ||||||||||| | ||| |
|
|
| T |
54395536 |
caatcttctcatccttaattgtattcctcatattataagcataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgcctt |
54395635 |
T |
|
| Q |
364 |
gtacttctctgcctcttgaaccatcttctcaatatcttcctt |
405 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||| |
|
|
| T |
54395636 |
atacttctctgcatctttcaccatcttctctatctcttcctt |
54395677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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