View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0895_low_12 (Length: 416)

Name: NF0895_low_12
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0895_low_12
NF0895_low_12
[»] chr4 (12 HSPs)
chr4 (89-416)||(14321547-14321872)
chr4 (97-345)||(14320448-14320696)
chr4 (119-269)||(14322123-14322274)
chr4 (119-269)||(14320953-14321104)
chr4 (117-233)||(46015353-46015469)
chr4 (117-186)||(46020632-46020701)
chr4 (126-233)||(46303795-46303902)
chr4 (117-233)||(46246232-46246348)
chr4 (117-238)||(46021253-46021372)
chr4 (117-233)||(46015899-46016016)
chr4 (138-205)||(41074446-41074513)
chr4 (148-233)||(46027944-46028028)
[»] chr1 (7 HSPs)
chr1 (117-285)||(50668442-50668610)
chr1 (117-285)||(50667981-50668148)
chr1 (117-205)||(3802628-3802716)
chr1 (161-225)||(50667377-50667441)
chr1 (153-227)||(3801740-3801814)
chr1 (117-208)||(3802189-3802280)
chr1 (198-264)||(50669235-50669299)
[»] chr8 (3 HSPs)
chr8 (117-222)||(4522916-4523021)
chr8 (117-227)||(4525289-4525397)
chr8 (152-206)||(39328272-39328326)
[»] scaffold0384 (1 HSPs)
scaffold0384 (150-248)||(5597-5695)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 89 - 416
Target Start/End: Complemental strand, 14321872 - 14321547
Alignment:
Q  89 gtcaatttgcctggtctagtaacaagtcttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttct 188  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  14321872 gtcaatttgcctggtctagtaaccaggcttaacaatcaatcatgagattgcattttcatgaaacaggaaagcaaaatgaattgtatcttcccatggttct 14321773  T
Q  189 acagttaatatctaaatcatgacaaatggatgaagtgcaggttaattcaactccaaagaacatatcattacaacatggagatgaaaacttactttctttt 288  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14321772 acagttaatatctaaatcatgacaaatggatgaagtgcagattaattcaactccaaagaacatatcattacaacatggagatgaaaacttactttctttt 14321673  T
Q  289 tctttaatcgtagcgttaaatcgttgaaccaatagatctgtcgtatctaccatattcctcgacggacgaactgtttattcatcaaagacaagagaataac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  14321672 tctttaatcgtagcgttaaatcgttgaaccaatagatctgtcgtatctaccatattcctcgacggacgaactgtttattcatcaaagac--gagaataac 14321575  T
Q  389 attagtttactgctgatgatgatgatga 416  Q
    ||||||||| ||||||||||||||||||    
T  14321574 attagtttaatgctgatgatgatgatga 14321547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 97 - 345
Target Start/End: Complemental strand, 14320696 - 14320448
Alignment:
Q  97 gcctggtctagtaacaagtcttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaa 196  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14320696 gcctggtctagtaaccaggcttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaa 14320597  T
Q  197 tatctaaatcatgacaaatggatgaagtgcaggttaattcaactccaaagaacatatcattacaacatggagatgaaaacttactttctttttctttaat 296  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14320596 tatctaaatcatgacaaatggatgaagtgcagattaattcaactccaaagaacatatcattagaacatggagatgaaaacttactttctttttctttaat 14320497  T
Q  297 cgtagcgttaaatcgttgaaccaatagatctgtcgtatctaccatattc 345  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  14320496 cgtagcgttaaatcgttgaaccaatagatctggcgtatctcccatattc 14320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 14322274 - 14322123
Alignment:
Q  119 aacaatcaatcatgagattgcattctcataaaacaggaaagcaaa-atgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatgg 217  Q
    ||||| |||||||||| |||||||| |||||||| |||||||||| | |||||||||||||||||||||||   || || ||||||||||  ||||||||    
T  14322274 aacaaccaatcatgagcttgcattcccataaaactggaaagcaaagaagaattgtatcttcacatggttcttatgtcaaaatctaaatcacaacaaatgg 14322175  T
Q  218 atgaagtgcaggttaattcaactccaaagaacatatcattacaacatggaga 269  Q
    ||||||||||  |||||||||||  ||||||||||| | |||||||| ||||    
T  14322174 atgaagtgcaaattaattcaactgtaaagaacatattaatacaacattgaga 14322123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 14321104 - 14320953
Alignment:
Q  119 aacaatcaatcatgagattgcattctcataaaacaggaaagcaaa-atgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatgg 217  Q
    ||||| |||||||||| |||||||| |||||||| |||||||||| | |||||||||||||||||||||||   || || ||||||||||  ||||||||    
T  14321104 aacaaccaatcatgagcttgcattcccataaaaccggaaagcaaagaagaattgtatcttcacatggttcttatgtcaaaatctaaatcacaacaaatgg 14321005  T
Q  218 atgaagtgcaggttaattcaactccaaagaacatatcattacaacatggaga 269  Q
    |||||||| |  |||||||||||  ||||||||||| | |||||||| ||||    
T  14321004 atgaagtgtaaattaattcaactgtaaagaacatattaatacaacattgaga 14320953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 46015469 - 46015353
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||| ||| | ||||| ||||||||||||||| || | | || || || ||||| ||| |||    
T  46015469 ttaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatcataacagatg 46015370  T
Q  217 gatgaagtgcaggttaa 233  Q
    ||||||||||| |||||    
T  46015369 gatgaagtgcatgttaa 46015353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 46020701 - 46020632
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggtt 186  Q
    |||||| ||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||||||||||    
T  46020701 ttaacactcaatcaagaggttgcattttcataaaaaaggaaaacaaaaagaattgtatcttcacatggtt 46020632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 46303795 - 46303902
Alignment:
Q  126 aatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtg 225  Q
    ||||| ||| ||||||| | |||||| ||||||||| || ||||||| ||||||||| ||| || ||| || ||||||||||| ||| ||||||||| ||    
T  46303795 aatcaagagcttgcattgtaataaaataggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatg 46303894  T
Q  226 caggttaa 233  Q
    || |||||    
T  46303895 catgttaa 46303902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 46246232 - 46246348
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| ||||||| ||| ||||||| |||||||| ||||||  |||| |||||||||||||||| |||| || | |||  |  |||||||| ||| |||    
T  46246232 ttaacattcaatcaagaggttgcattttcataaaaaaggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatcataacagatg 46246331  T
Q  217 gatgaagtgcaggttaa 233  Q
    ||| ||||||| |||||    
T  46246332 gattaagtgcatgttaa 46246348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 46021372 - 46021253
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| ||||||| ||| |||||||   |||||||||||||||| || ||||||| |||||| ||| || || ||| |  ||||||||||| ||| |||    
T  46021372 ttaacattcaatcaagaggttgcatttctataaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaagtca--atctaaatcataacagatg 46021275  T
Q  217 gatgaagtgcaggttaattcaa 238  Q
    |||| |||||| ||||| ||||    
T  46021274 gatggagtgcatgttaactcaa 46021253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 46016016 - 46015899
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaa-caggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaat 215  Q
    |||||| ||||||| ||  ||||||| |||||||| |||||||||||||  |||||||| ||||||| ||| || ||| || || |||||||| ||| ||    
T  46016016 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagat 46015917  T
Q  216 ggatgaagtgcaggttaa 233  Q
    ||| ||||| || |||||    
T  46015916 ggacgaagtacatgttaa 46015899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 41074513 - 41074446
Alignment:
Q  138 gcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaat 205  Q
    ||||| || |||||||  ||||||||| ||||||||||||||||||||| || ||| || ||||||||    
T  41074513 gcattttcttaaaacattaaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 46028028 - 46027944
Alignment:
Q  148 aaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtgcaggttaa 233  Q
    |||||||||||||||||  |||||||||||||||| ||| || ||| || || |||||||| ||| ||||| ||||| || |||||    
T  46028028 aaaacaggaaagcaaaaataattgtatcttcacatagtt-taaagtcaaaatttaaatcataacagatggacgaagtacatgttaa 46027944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 50668610 - 50668442
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| || |||| ||| ||||||| ||||||| ||| ||||||||| ||||| ||| |||||||| ||||| ||| || |||||||||||||||||||    
T  50668610 ttaacactcgatcaagagcttgcattttcataaagcagtaaagcaaaaagaattctattttcacatgcttctaaagtcaaaatctaaatcatgacaaatg 50668511  T
Q  217 gatgaagtgcaggttaattcaactccaaagaacatatcattacaacatggagatgaaaacttactttct 285  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||||||  |||  ||||||||||||||    
T  50668510 gatgaagtgcagattaattcaactgcaaagaacatattaatacaacatcaagagtaaaacttactttct 50668442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 50668148 - 50667981
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaa-ttgtatcttcacatggttctacagttaatatctaaatcatgacaaat 215  Q
    |||||| ||||| | ||| ||||||| ||||||| |||  ||||||||  || ||||||||||||||||||||| ||| || || |||||||||||| ||    
T  50668148 ttaacattcaattaagagcttgcattttcataaagcagtgaagcaaaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatat 50668049  T
Q  216 ggatgaagtgcaggttaattcaactccaaagaacatatcattacaacatggagatgaaaacttactttct 285  Q
    ||| ||||||||   |||||||||| |||||||||||| |||||||||| ||| || |||||||||||||    
T  50668048 ggacgaagtgcaaactaattcaactgcaaagaacatatgattacaacatcgag-tg-aaacttactttct 50667981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 3802628 - 3802716
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaat 205  Q
    |||||| ||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||||||| || || ||| || ||||||||    
T  3802628 ttaacactcaatcaagaggttgcattttcataaaataggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaaat 3802716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 50667441 - 50667377
Alignment:
Q  161 aaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtg 225  Q
    |||| |||||| ||||| ||||||||||| ||| || ||||||||||||||||| ||||||||||    
T  50667441 aaaaagaattgcatcttgacatggttctaaagtcaaaatctaaatcatgacaaaaggatgaagtg 50667377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 3801740 - 3801814
Alignment:
Q  153 aggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtgca 227  Q
    ||||||||| || ||||||| ||||||||||||| || ||| || ||||||||||| ||| ||||||||| ||||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgca 3801814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 3802189 - 3802280
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcat 208  Q
    |||||| |||| || ||| ||| ||| |||||||| ||||||||||||  ||||||| |||||||||||| || |||  | |||||||||||    
T  3802189 ttaacactcaaacaagaggttgtattttcataaaataggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcat 3802280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 50669299 - 50669235
Alignment:
Q  198 atctaaatcatgacaaatggatgaagtgcaggttaattcaactccaaagaacatatcattacaacat 264  Q
    ||||||||| | ||||||||||||||||||  ||||||||||| ||||||||| |||| || |||||    
T  50669299 atctaaatcgtaacaaatggatgaagtgca--ttaattcaactgcaaagaacacatcaatagaacat 50669235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 4522916 - 4523021
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| ||||||| ||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| || ||| || ||||||||||| ||| |||    
T  4522916 ttaacactcaatcaagagcttgaattttcataaaacaggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T
Q  217 gatgaa 222  Q
     |||||    
T  4523016 aatgaa 4523021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 4525289 - 4525397
Alignment:
Q  117 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatg 216  Q
    |||||| ||||||| ||| |||  || |||||||||| |||||||||| |||||||  |||||||||||| || ||| || | ||| ||||| ||| |||    
T  4525289 ttaacactcaatcaagagcttgatttttcataaaacaagaaagcaaaaagaattgt--cttcacatggttttaaagtcaaaacctagatcataacagatg 4525386  T
Q  217 gatgaagtgca 227  Q
    |||||||||||    
T  4525387 gatgaagtgca 4525397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 39328326 - 39328272
Alignment:
Q  152 caggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatc 206  Q
    ||||||| ||||| | |||||||||||||||||||||||||| || |||||||||    
T  39328326 caggaaaacaaaaagtattgtatcttcacatggttctacagtcaaaatctaaatc 39328272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 5597 - 5695
Alignment:
Q  150 aacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagtgcaggttaattcaactccaaagaa 248  Q
    ||||| ||||||||| ||||||||||||| ||||||||||| || || ||||||||||| | | ||||||||| ||||  ||||||||||  |||||||    
T  5597 aacagtaaagcaaaaagaattgtatcttcccatggttctacggtaaaaatctaaatcataatagatggatgaaatgcaaattaattcaaccgcaaagaa 5695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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