View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0895_low_13 (Length: 396)

Name: NF0895_low_13
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0895_low_13
NF0895_low_13
[»] chr4 (8 HSPs)
chr4 (1-281)||(14322176-14322455)
chr4 (1-281)||(14321006-14321285)
chr4 (29-99)||(14320605-14320674)
chr4 (5-115)||(46303772-46303881)
chr4 (31-112)||(46020632-46020712)
chr4 (38-131)||(46021310-46021402)
chr4 (29-99)||(14321773-14321842)
chr4 (12-62)||(41074446-41074495)
[»] chr8 (2 HSPs)
chr8 (5-133)||(4522884-4523011)
chr8 (5-129)||(4525261-4525382)
[»] chr1 (6 HSPs)
chr1 (1-133)||(50668511-50668642)
chr1 (10-133)||(50668057-50668180)
chr1 (7-114)||(3802615-3802721)
chr1 (10-65)||(50667395-50667450)
chr1 (5-53)||(3801751-3801799)
chr1 (12-44)||(23626944-23626976)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 14322176 - 14322455
Alignment:
Q  1 catttgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14322176 catttgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttg 14322275  T
Q  101 atatgcacataagttagttgcgtttatcttgctcttggttccatgacttgnnnnnnngaccctatttaattcactgttatttattttttgcttttgtctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||    
T  14322276 atatgcacataagttagttgcgtttatcttgctcttggttccatgacttgaaaaaaagaccctatttaattctctgttatttattttttgcttttgtctg 14322375  T
Q  201 tctgctgttatgnnnnnnnggctgttcaatttatgtattctttgttttctgtggccccttcaatcaaatctcttcgacacc 281  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14322376 tctgctgttatgtttttttggctgttcaatttatgtattctttgttttctgt-gccccttcaatcaaatctcttcgacacc 14322455  T

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Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 14321006 - 14321285
Alignment:
Q  1 catttgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14321006 catttgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccggttttatgggaatgcaagctcatgattggttgttg 14321105  T
Q  101 atatgcacataagttagttgcgtttatcttgctcttggttccatgacttgnnnnnnngaccctatttaattcactgttatttattttttgcttttgtctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||    
T  14321106 atatgcacataagttagttgcgtttatcttgctcttggttccatgacttggaaaaaagaccctatttaattctctgttatttattttttgcttttgtctg 14321205  T
Q  201 tctgctgttatgnnnnnnnggctgttcaatttatgtattctttgttttctgtggccccttcaatcaaatctcttcgacacc 281  Q
    ||||||||||||       |||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||    
T  14321206 tctgctgttatgtttttttggctgttcaatttatgcattctttgttttctgt-gccccttccatcaaatctctttgacacc 14321285  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 14320605 - 14320674
Alignment:
Q  29 agaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgtt 99  Q
    ||||||||||||||||||||||| | |||||||||| |||||||| |||||||| |||||||||| |||||    
T  14320605 agaaccatgtgaagatacaattcat-tttgctttcctgttttatgagaatgcaatctcatgattgattgtt 14320674  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 46303881 - 46303772
Alignment:
Q  5 tgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatat 104  Q
    |||| |||||||||||||||| | | ||| ||||||||| ||||||||| | ||||||||  ||||||   ||||||||||| |||||   |||| ||||    
T  46303881 tgttatgatttagattttgactttaaaactatgtgaagacacaattctt-tatgctttcctattttattacaatgcaagctcttgattttgtgttaatat 46303783  T
Q  105 gcacataagtt 115  Q
    |||||||||||    
T  46303782 gcacataagtt 46303772  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 46020632 - 46020712
Alignment:
Q  31 aaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatatgcacataa 112  Q
    ||||||||||||||||||||||| |||| |||||  |||||||  ||||||| ||| ||||||  |||| ||||||||||||    
T  46020632 aaccatgtgaagatacaattctt-tttgttttccttttttatgaaaatgcaacctcttgattgagtgttaatatgcacataa 46020712  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 46021310 - 46021402
Alignment:
Q  38 tgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatatgcacataagttagttgcgtttatcttg 131  Q
    |||||| ||||||||| | |||||||| ||||||| | ||||||| ||| ||||||  |||| ||||||||||||||| |||  ||||||||||    
T  46021310 tgaagacacaattctt-tctgctttcctgttttatagaaatgcaacctcttgattgaatgttaatatgcacataagttggttatgtttatcttg 46021402  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 14321773 - 14321842
Alignment:
Q  29 agaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgtt 99  Q
    ||||||||| ||||||||||||| | |||||||||| |||| |||  ||||||| |||||||||| |||||    
T  14321773 agaaccatgggaagatacaattcat-tttgctttcctgtttcatgaaaatgcaatctcatgattgattgtt 14321842  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 41074446 - 41074495
Alignment:
Q  12 atttagattttgacataagaaccatgtgaagatacaattcttctttgcttt 62  Q
    |||||||||||||| | | ||||||||||||||||||||||| ||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctt-tttgcttt 41074495  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 4523011 - 4522884
Alignment:
Q  5 tgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatat 104  Q
    |||| |||||||||||||||| | | ||||||||||||| ||||||||| |||||||||| ||||||||  ||| ||||||| ||||||  |||| | ||    
T  4523011 tgttatgatttagattttgactttaaaaccatgtgaagacacaattctt-tttgctttcctgttttatgaaaattcaagctcttgattgagtgttaaaat 4522913  T
Q  105 gcacataagttagttgcgtttatcttgct 133  Q
    ||||||||| | |||  ||||||||||||    
T  4522912 gcacataagctggttatgtttatcttgct 4522884  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 4525382 - 4525261
Alignment:
Q  5 tgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatat 104  Q
    |||| |||| ||| ||||||| | | |||||||||||||  |||||||| |||||||||  ||||||||  ||  ||||||| ||||||  |||| ||||    
T  4525382 tgttatgatctaggttttgactttaaaaccatgtgaaga--caattctt-tttgctttcttgttttatgaaaaatcaagctcttgattgagtgttaatat 4525286  T
Q  105 gcacataagttagttgcgtttatct 129  Q
    ||||||||| |||||  ||||||||    
T  4525285 gcacataagctagttatgtttatct 4525261  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 50668511 - 50668642
Alignment:
Q  1 catttgttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttg 100  Q
    |||||||  |||||||||||||||| | |||| |||||||| ||| ||||||| |||||||| | | ||||||  ||||||||||| |||| |  ||||     
T  50668511 catttgtcatgatttagattttgactttagaagcatgtgaaaatagaattctt-tttgctttactgctttatgaaaatgcaagctcttgatcgagtgtta 50668609  T
Q  101 atatgcacataagttagttgcgtttatcttgct 133  Q
    ||||||||||||||| |||  ||||||||||||    
T  50668610 atatgcacataagttggttatgtttatcttgct 50668642  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 50668057 - 50668180
Alignment:
Q  10 tgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatatgcaca 109  Q
    ||||||| |||||||| | |||||||||||||||||||||| || |||||||  | | ||||||  ||||||||||| | ||||  |||| ||||||||     
T  50668057 tgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactgctttatgaaaatgcaagctcttaattgaatgttaatatgcacg 50668156  T
Q  110 taagttagttgcgtttatcttgct 133  Q
    |||||| |||  ||||||||||||    
T  50668157 taagttggttatgtttatcttgct 50668180  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 3802721 - 3802615
Alignment:
Q  7 ttgtgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttccagttttatgggaatgcaagctcatgattggttgttgatatgc 106  Q
    |||| |||||||||||||| | | || |||||||||||||||||| | |||| |||||  |||||||  ||||||| ||| ||||||  |||| ||||||    
T  3802721 ttgttatttagattttgactttaaaatcatgtgaagatacaattcgt-tttgttttcctattttatgaaaatgcaacctcttgattgagtgttaatatgc 3802623  T
Q  107 acataagt 114  Q
    ||||||||    
T  3802622 acataagt 3802615  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 50667395 - 50667450
Alignment:
Q  10 tgatttagattttgacataagaaccatgtgaagatacaattcttctttgctttcca 65  Q
    |||||||||||||||| | |||||||||| ||||| |||||||| |||||||||||    
T  50667395 tgatttagattttgactttagaaccatgtcaagatgcaattcttttttgctttcca 50667450  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 3801799 - 3801751
Alignment:
Q  5 tgttgtgatttagattttgacataagaaccatgtgaagatacaattctt 53  Q
    |||| |||||||||||||||| | | ||||||||||||| |||||||||    
T  3801799 tgttatgatttagattttgactttaaaaccatgtgaagacacaattctt 3801751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 23626944 - 23626976
Alignment:
Q  12 atttagattttgacataagaaccatgtgaagat 44  Q
    |||||||||||||||| ||||||||||||||||    
T  23626944 atttagattttgacattagaaccatgtgaagat 23626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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