View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0895_low_2 (Length: 657)
Name: NF0895_low_2
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 6e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 290 - 573
Target Start/End: Original strand, 36890631 - 36890898
Alignment:
| Q |
290 |
gcaatatattgttcttttacgcatatatcaagagaaaaacattgacataacaaatgtttttctatgactaattacacatgaattaatggaagatcataag |
389 |
Q |
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| T |
36890631 |
gcaatatattgttcttttacacatatatcaagagaaaaacattgacataacaaatgtttttctatgactaat-acacatg--------gaagat---aag |
36890718 |
T |
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| Q |
390 |
caggcaacaagctacaagctgcgctgctagcttttttggatgacacatatattt-acttctgnnnnnnnggtagaaacagatattgacatat--tgttct |
486 |
Q |
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| T |
36890719 |
caggcaacaagct-------gcgccgctagctttttcggatgacacatatattttacttctgttttttaggtagaaacagatattgacatatattgtgct |
36890811 |
T |
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| Q |
487 |
ataattggttatacatatgtgttatctgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctg |
573 |
Q |
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| T |
36890812 |
ataattggttatacatatgtgttatgtgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctg |
36890898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 36890157 - 36890374
Alignment:
| Q |
6 |
agtgagatgaatgtaccaaaacaaaaatatatagtgatattnnnnnnnnnntgaaataagaacatacataactgtgaaagtaattaataattattttatn |
105 |
Q |
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| T |
36890157 |
agtgatatgaatgtaccaaaacaaaaatatatagtgatattaaaaaaaaa-tgaaataagaacatacataactgtgaaagtaatttataattattttata |
36890255 |
T |
|
| Q |
106 |
nnnnnntggagaggggaaatttgattaataagagtgacactaatgatcaaattacaactcagatgaaatttgaaccaccgaacggacacctcttggacat |
205 |
Q |
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| T |
36890256 |
aaaaaatggagaggggaaatttgattaataagagtgacacaaataatcaaattacaactcagatgaaatttgaaccaccgaacggacacctcttggatat |
36890355 |
T |
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| Q |
206 |
agctattccgtttatattt |
224 |
Q |
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| T |
36890356 |
ggctattccgtttatattt |
36890374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 36877777 - 36877831
Alignment:
| Q |
519 |
aacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctg |
573 |
Q |
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| T |
36877777 |
aacagatttggctgtgataatagtacatcaatatgattacctcagcacacatctg |
36877831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 29824627 - 29824582
Alignment:
| Q |
119 |
gggaaatttgattaataagagtgacactaatgatcaaattacaact |
164 |
Q |
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| T |
29824627 |
gggaaattttattaataacagtggcactaatgaccaaattacaact |
29824582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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