View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0895_low_3 (Length: 626)

Name: NF0895_low_3
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0895_low_3
NF0895_low_3
[»] chr3 (1 HSPs)
chr3 (1-626)||(34899220-34899844)


Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 34899220 - 34899844
Alignment:
Q  1 ctacatttgtaaaatttcaacataagtttacagatacgtttattttaaccttgtaaaaaactagttattatagtatttgtattgttcttttgtgactctt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  34899220 ctacatttataaaatttcaacataagtttacagatacgtttattttaacctcgtaaaaaactggttattatagtatttttattgttcttttgtgactctt 34899319  T
Q  101 ttttcttttaaatttatcagaagagtcttgctcaattttaaaaatcagggctatacaattcatcaatgaannnnnnnncccttttgttttgacacttctc 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  34899320 ttttcttttaaatttatcagaagagtcttgctcaattctaaaaatcagggctatacaattcatcaatgaattttttttcccttttgttttgacacttctc 34899419  T
Q  201 taattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  34899420 taattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaa 34899519  T
Q  301 nnnnntctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctt 400  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899520 aaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctt 34899619  T
Q  401 agttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagat 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34899620 agttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagat 34899718  T
Q  501 aggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtga 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899719 aggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtga 34899818  T
Q  601 gaatggaaggaaaattttgagactat 626  Q
    ||||||||||||||||||||||||||    
T  34899819 gaatggaaggaaaattttgagactat 34899844  T

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