View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0895_low_3 (Length: 626)
Name: NF0895_low_3
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 34899220 - 34899844
Alignment:
| Q |
1 |
ctacatttgtaaaatttcaacataagtttacagatacgtttattttaaccttgtaaaaaactagttattatagtatttgtattgttcttttgtgactctt |
100 |
Q |
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| T |
34899220 |
ctacatttataaaatttcaacataagtttacagatacgtttattttaacctcgtaaaaaactggttattatagtatttttattgttcttttgtgactctt |
34899319 |
T |
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| Q |
101 |
ttttcttttaaatttatcagaagagtcttgctcaattttaaaaatcagggctatacaattcatcaatgaannnnnnnncccttttgttttgacacttctc |
200 |
Q |
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| T |
34899320 |
ttttcttttaaatttatcagaagagtcttgctcaattctaaaaatcagggctatacaattcatcaatgaattttttttcccttttgttttgacacttctc |
34899419 |
T |
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| Q |
201 |
taattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899420 |
taattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaa |
34899519 |
T |
|
| Q |
301 |
nnnnntctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899520 |
aaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttctt |
34899619 |
T |
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| Q |
401 |
agttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagat |
500 |
Q |
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| T |
34899620 |
agttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagat |
34899718 |
T |
|
| Q |
501 |
aggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899719 |
aggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtga |
34899818 |
T |
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| Q |
601 |
gaatggaaggaaaattttgagactat |
626 |
Q |
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| T |
34899819 |
gaatggaaggaaaattttgagactat |
34899844 |
T |
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