View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0895_low_4 (Length: 604)
Name: NF0895_low_4
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 279 - 595
Target Start/End: Complemental strand, 37067289 - 37066973
Alignment:
| Q |
279 |
gagtaagaacacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatg |
378 |
Q |
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| T |
37067289 |
gagtaagagcacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgataaatagcacgtaaacaatgacaaaaaggtgatg |
37067190 |
T |
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| Q |
379 |
tgaataccaaaatgcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctaca |
478 |
Q |
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| T |
37067189 |
tgaataccaaaatgcattgaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccaaggttgtgctaaaatgaaagctata |
37067090 |
T |
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| Q |
479 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
578 |
Q |
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| T |
37067089 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
37066990 |
T |
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| Q |
579 |
gttcatattcttcatct |
595 |
Q |
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| T |
37066989 |
gttcatattcttcatct |
37066973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 37067535 - 37067360
Alignment:
| Q |
30 |
taaattaattacaaaattgaagatgaagggagtgaaatgaaattcttaaaaatgtacctttagtatcctcacagatttgtagccagatctaaatgcacga |
129 |
Q |
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| T |
37067535 |
taaattaattacaaaattgaagatgaagggagtgaaatgaaattcttaaaaatgtacctttagtatcctcacagatttgtagccagatctaaatgcacga |
37067436 |
T |
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| Q |
130 |
agtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtctatatatgtcacataattttgt |
205 |
Q |
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| T |
37067435 |
agtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtctatatatgtcacataattttgt |
37067360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 292 - 588
Target Start/End: Original strand, 46561636 - 46561932
Alignment:
| Q |
292 |
taccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatgtgaataccaaaat |
391 |
Q |
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| T |
46561636 |
taccgttttcttgtaccatttcttggagaggtataagaagtatccatggacaataagaagagcataaacaatgacaaagaggtgatgtgaataccaaaaa |
46561735 |
T |
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| Q |
392 |
gcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctacagccataagcacaa |
491 |
Q |
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| T |
46561736 |
gcattgaaaccagtgagcttcttcaaaagtggagggagcttaagcttgtttcttcggaaccaaggttgggccaaagtaaaagctatagccataagcacta |
46561835 |
T |
|
| Q |
492 |
ccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgggttcatattc |
588 |
Q |
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| T |
46561836 |
ccatgactatcccagtccaaccctctgtaccttttacaaaccaccaataattgttgggcctatgatcaccaaaaaatttcttcatgggaacatattc |
46561932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 46561460 - 46561539
Alignment:
| Q |
105 |
tttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtct |
184 |
Q |
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| T |
46561460 |
tttgtagccagacctaaaagcacgaagtagtcgctcacatgcgtatattatcataggaatggcaagatacatccaagtct |
46561539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 39983149 - 39983097
Alignment:
| Q |
371 |
aggtgatgtgaataccaaaatgcattaaaaccagtgagtttcttgaggggttt |
423 |
Q |
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| T |
39983149 |
aggtgatgagaataccaaaaggcattgaaacctgtgagtttgttgaagggttt |
39983097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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