View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0895_low_6 (Length: 546)
Name: NF0895_low_6
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 34897827 - 34897379
Alignment:
| Q |
8 |
gttctaccgaacaaaacggtattgaagatgtccacttctannnnnnnn-atcagctgatttgtccatttctacaacatttaagaaatggagagagggttt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34897827 |
gttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaatggagagagggttt |
34897728 |
T |
|
| Q |
107 |
ttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaaatacagtaaatta |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34897727 |
ttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaaatacagtaaatta |
34897628 |
T |
|
| Q |
207 |
ctataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatattt-aaaatatagtaaatcactacaagatgcc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34897627 |
ctataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatatttaaaaatatagtaaatcactacaagatgcc |
34897528 |
T |
|
| Q |
306 |
tttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttaggataaaaacatgcattttctaagcataaagtcac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34897527 |
tttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttgggataaaaacatgcattttctaagcataaagtcac |
34897428 |
T |
|
| Q |
406 |
gaaccattgatgtgtaaccctctctacgaagctaaagttagcattgatg |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34897427 |
gaaccattgatgtgtaaccctctctacgaagctaaagttagcattgatg |
34897379 |
T |
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