View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0895_low_8 (Length: 452)
Name: NF0895_low_8
Description: NF0895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0895_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 85 - 444
Target Start/End: Complemental strand, 46806148 - 46805789
Alignment:
| Q |
85 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgag |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46806148 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgag |
46806049 |
T |
|
| Q |
185 |
atcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46806048 |
atcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatg |
46805949 |
T |
|
| Q |
285 |
actgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46805948 |
actgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactg |
46805849 |
T |
|
| Q |
385 |
acttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46805848 |
acttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
46805789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 85 - 439
Target Start/End: Original strand, 5888734 - 5889088
Alignment:
| Q |
85 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttcca-gtttagatttga |
183 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||| || |||| | ||||||||||||||| ||||| |||| ||| | | | |||||||||| | |
|
|
| T |
5888734 |
catcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacgcagaagctt-tactatgtttagatttaa |
5888832 |
T |
|
| Q |
184 |
gatcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccat |
283 |
Q |
| |
|
||||| | ||| |||| |||| | ||||| | | | || |||| |||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
5888833 |
gatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgttttagttccctctcccaattgagagaatcttgatctcttgccat |
5888932 |
T |
|
| Q |
284 |
gactgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccact |
383 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||| ||| || | || || |||||||||||||| || | |||||||| |||||||| || |
|
|
| T |
5888933 |
gactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaacc |
5889032 |
T |
|
| Q |
384 |
gacttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttc |
439 |
Q |
| |
|
| ||| ||||||| ||| ||||| | ||| || || |||||||| | ||||||||| |
|
|
| T |
5889033 |
gtcttttctacttgcttcgatgcagcaacagcatcttcggctttgtcaatagcttc |
5889088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 250 times since January 2019
Visitors: 6695