View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_high_14 (Length: 349)
Name: NF0896_high_14
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 47364750 - 47364421
Alignment:
| Q |
1 |
caaacttagacattagacttgtctgtaaatggaagaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcattgcaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47364750 |
caaacttagacattagacttgtctgtaaatggaagaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcgttgcaaaga |
47364651 |
T |
|
| Q |
101 |
ccaaaaacatgcacgttatgagaactttactcttaacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattga |
200 |
Q |
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| T |
47364650 |
ccaaaaacatgcacgttatgagaactttactcttaacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattga |
47364551 |
T |
|
| Q |
201 |
gtgagatccaacatccaaaattgattacctatcctatccatcatatgaaatttccattaactctttaaaaaaggagaagattcatagttatgagacctag |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47364550 |
gtgagaaccaacatccaaaattgattacctatcctatccatcatatgaaatttccataaactctttaaaaaaggagaagattcatagttatgagacctag |
47364451 |
T |
|
| Q |
301 |
gtgctttgaaaaaagcatagtgatgatgtc |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47364450 |
gtgctttgaaaaaagcatagtgatgatgtc |
47364421 |
T |
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