View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0896_high_2 (Length: 616)

Name: NF0896_high_2
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0896_high_2
NF0896_high_2
[»] chr4 (11 HSPs)
chr4 (47-615)||(55659706-55660275)
chr4 (143-219)||(52986832-52986908)
chr4 (147-219)||(54862630-54862702)
chr4 (46-132)||(55634967-55635053)
chr4 (142-219)||(55634857-55634934)
chr4 (147-226)||(54626649-54626728)
chr4 (284-402)||(55634670-55634789)
chr4 (156-218)||(3672185-3672247)
chr4 (363-405)||(55666135-55666177)
chr4 (349-393)||(52987050-52987094)
chr4 (179-219)||(50192566-50192606)
[»] chr3 (2 HSPs)
chr3 (142-219)||(16437827-16437904)
chr3 (284-402)||(16437640-16437759)
[»] chr8 (1 HSPs)
chr8 (142-218)||(9889162-9889238)
[»] chr2 (2 HSPs)
chr2 (146-219)||(13401053-13401126)
chr2 (518-589)||(20267091-20267159)


Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 47 - 615
Target Start/End: Original strand, 55659706 - 55660275
Alignment:
Q  47 caagcagcttcatactgaacaaatgaagttgcaaaaacaaccaatcaagacaacaaaatttcaagtacataaatttagaaaagatagactagttagaaac 146  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55659706 caagcagcttcatactaaacaaatgaagttgcaaaaacaaccaatcaaaacaacaaaatttcaagtacataaatttagaaaagatagactagttagaaac 55659805  T
Q  147 aaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataacatgatcagtctgagggttatgtactac 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  55659806 aaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacgccagattgaataacatgatcaatctgagggttatgtactac 55659905  T
Q  247 agaacaaaagaaacatcagttagaatgaaagcaacatagcaatgcattaaaa-catgaaagaaaatcaataattacttgtggagataagctttcgaaagt 345  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55659906 agaacaaaacaaacagcagttagaatgaaagcaacatagtaatgcattaaaaacatgaaagaaaatcaataattacttgtggagataagctttcgaaagt 55660005  T
Q  346 gggtagttgcttccaactgttggctgttatcatccgaccagaccatagcaactattgcagagatggtgatcgatggttaccttttttgtctttttgtcga 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55660006 gggtagttgcttccaactgttggctgttatcatccgaccagaccatagcaactattgcagagatggtgatcgatggttaccttttttgtctttttgtcga 55660105  T
Q  446 caatggaggaaaatgaagagactgttgaggttaaaggccatcaagatagggatatgcggtagcaaattaaggtgaaaaccatgatttaggaattgatgat 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55660106 caatggaggaaaatgaagagactgttgaggttaaaggccatcaagatagggatatgcggtaacaaattaaggtgaaaaccatgatttaggaattgatgat 55660205  T
Q  546 atgcgtaaccgtaaattaccaccgagaattaaggaactttgagataaggacagtactactcttacccatc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55660206 atgcgtaaccgtaaattaccaccgagaattaaggaactttgagataaggacagtactactcttacccatc 55660275  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 52986832 - 52986908
Alignment:
Q  143 aaacaaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  52986832 aaacaaacctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacagcagattgaataac 52986908  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 54862630 - 54862702
Alignment:
Q  147 aaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  54862630 aaacctgaagttgaggaaaatcctccctatatagaaattgaacaaaacgaggaacaacaccagattgaataac 54862702  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 55635053 - 55634967
Alignment:
Q  46 ccaagcagcttcatactgaacaaatgaagttgcaaaaacaaccaatcaagacaacaaaatttcaagtacataaatttagaaaagata 132  Q
    ||||||||||||| ||| ||||||  |||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  55635053 ccaagcagcttcaaactaaacaaacaaagttgcacaaaaaaccaatcaaaacaacaaaatttcaactacataaatttagaaaagata 55634967  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 55634934 - 55634857
Alignment:
Q  142 gaaacaaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    ||||||||| |||||| ||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  55634934 gaaacaaacttgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataac 55634857  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 54626728 - 54626649
Alignment:
Q  147 aaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataacatgatca 226  Q
    ||||||||||||||||||||||  || |   |||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  54626728 aaacctgaagttgaggaaaatcccccttgtctagaaattgaacaaaacggggaacaacaccagattgaataacatcatca 54626649  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 402
Target Start/End: Complemental strand, 55634789 - 55634670
Alignment:
Q  284 agcaatgcattaaaa-catgaaagaaaatcaataattacttgtggagataagctttcgaaagtgggtagttgcttccaactgttggctgttatcatccga 382  Q
    ||||| ||||||||| |||||||||||||||||| ||||   || | | |||| | ||||| || |||||||||||||  |||||| |||||||||| ||    
T  55634789 agcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcgga 55634690  T
Q  383 ccagaccatagcaactattg 402  Q
    ||||||| ||||||| ||||    
T  55634689 ccagaccgtagcaaccattg 55634670  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 3672185 - 3672247
Alignment:
Q  156 gttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataa 218  Q
    ||||||||||||||||  ||| |||||||||||||| |||||||||  || ||||||||||||    
T  3672185 gttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacggcatcagattgaataa 3672247  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 55666135 - 55666177
Alignment:
Q  363 tgttggctgttatcatccgaccagaccatagcaactattgcag 405  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  55666135 tgtttgctgttatcatccgaccagaccatagcaacaattgcag 55666177  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 52987050 - 52987094
Alignment:
Q  349 tagttgcttccaactgttggctgttatcatccgaccagaccatag 393  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||    
T  52987050 tagttgcttccagttgttggatgttatcatccgaccagaccatag 52987094  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 50192566 - 50192606
Alignment:
Q  179 agaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  50192566 agaaactcaacaaaacgtggcacaacaccagattgaataac 50192606  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 16437904 - 16437827
Alignment:
Q  142 gaaacaaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    ||||||||| |||||| ||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  16437904 gaaacaaacttgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataac 16437827  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 402
Target Start/End: Complemental strand, 16437759 - 16437640
Alignment:
Q  284 agcaatgcattaaaa-catgaaagaaaatcaataattacttgtggagataagctttcgaaagtgggtagttgcttccaactgttggctgttatcatccga 382  Q
    ||||| ||||||||| |||||||||||||||||| ||||   || | | |||| | ||||| || |||||||||||||  |||||| |||||||||| ||    
T  16437759 agcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcgga 16437660  T
Q  383 ccagaccatagcaactattg 402  Q
    ||||||| ||||||| ||||    
T  16437659 ccagaccgtagcaaccattg 16437640  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 9889238 - 9889162
Alignment:
Q  142 gaaacaaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataa 218  Q
    ||||||||||||  ||||||||||||||||  ||| |||||||||||||| |||||||||| || ||||||||||||    
T  9889238 gaaacaaacctggcgttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacagcatcagattgaataa 9889162  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 13401126 - 13401053
Alignment:
Q  146 caaacctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacaccagattgaataac 219  Q
    |||||||||||||| |||||||| |||| || |||||| | |||||| || |||||||||||||||||||||||    
T  13401126 caaacctgaagttggggaaaatcctcccgaactagaaactgaacaaagcggggaacaacaccagattgaataac 13401053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 589
Target Start/End: Complemental strand, 20267159 - 20267091
Alignment:
Q  518 tgaaaaccatgatttaggaattgatgatatgcgtaaccgtaaattaccaccgagaattaaggaactttgaga 589  Q
    |||| ||||||||||||||||||||   |||| || |||||||||||||||||||||||||| | |||||||    
T  20267159 tgaataccatgatttaggaattgat---atgcctatccgtaaattaccaccgagaattaagggattttgaga 20267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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