View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_high_22 (Length: 306)
Name: NF0896_high_22
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 23701381 - 23701531
Alignment:
| Q |
119 |
acatctatagtagtatttgccccaagagtggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataattgaaaaatttctt |
218 |
Q |
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||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23701381 |
acatctatagtagtatttgacataagagcggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataatcgaaaaatttctt |
23701480 |
T |
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| Q |
219 |
catcatgatcatgaaagactaagagggagatatcatctactaaattttgat |
269 |
Q |
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||||||||||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
23701481 |
catcatgatcatgtagggctaagagggagatatcatctactaaattttgat |
23701531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 23694434 - 23694327
Alignment:
| Q |
119 |
acatctatagtagtatttgccccaagagtggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataattgaaaaatttctt |
218 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | |||||||||||| |
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| T |
23694434 |
acatctatagtagtatttgacataagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctt |
23694335 |
T |
|
| Q |
219 |
catcatga |
226 |
Q |
| |
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||||||| |
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| T |
23694334 |
tatcatga |
23694327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 23701276 - 23701323
Alignment:
| Q |
8 |
tgagatgaagaataagacggcgacaaagaatattcacctacaaaagcc |
55 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701276 |
tgagaagaagaataagacggcgacaaagaatattcacctacaaaagcc |
23701323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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