View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_high_33 (Length: 259)
Name: NF0896_high_33
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_high_33 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 40181680 - 40181441
Alignment:
| Q |
21 |
acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc |
120 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40181680 |
acatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatacttc |
40181581 |
T |
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| Q |
121 |
ataaagatgctttggaaggataataaggatctcatcgatacacatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
40181580 |
ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcactatgatttcaatg |
40181481 |
T |
|
| Q |
221 |
ttaaactaaggaagaaatacatatt-ttttctgtgggaca |
259 |
Q |
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| T |
40181480 |
ttaaactaaggaagaaatacatatttttttctgtgggaca |
40181441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
| Q |
25 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac |
86 |
Q |
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| T |
40180999 |
catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac |
40180938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
| Q |
44 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
113 |
Q |
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| T |
38606137 |
tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat |
38606068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
| Q |
56 |
aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
113 |
Q |
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| T |
41885617 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat |
41885674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 44459246 - 44459430
Alignment:
| Q |
21 |
acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc |
120 |
Q |
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|||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| |||| |
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| T |
44459246 |
acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt |
44459345 |
T |
|
| Q |
121 |
ataaagatgctttggaaggataataaggatctcatcgatacacatgttttggaatatcttgttgaatcaataagcactgctgttc |
205 |
Q |
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|||||| || |||||||| |||| ||||| |||||| ||| | |||| |||||| |||||| ||||||| || || |||||| |
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| T |
44459346 |
ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc |
44459430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 44466779 - 44466963
Alignment:
| Q |
21 |
acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc |
120 |
Q |
| |
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|||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| |||| |
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| T |
44466779 |
acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt |
44466878 |
T |
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| Q |
121 |
ataaagatgctttggaaggataataaggatctcatcgatacacatgttttggaatatcttgttgaatcaataagcactgctgttc |
205 |
Q |
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|||||| || |||||||| |||| ||||| |||||| ||| | |||| |||||| |||||| ||||||| || || |||||| |
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| T |
44466879 |
ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc |
44466963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
| Q |
44 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
113 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| |||||||| |
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| T |
34502688 |
tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat |
34502619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
| Q |
44 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag |
126 |
Q |
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||||||||||||||||||| | |||||||||||| |||||||| ||| ||| | ||||| |||||||| |||| |||||| |
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| T |
44459962 |
tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag |
44460044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
| Q |
44 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag |
126 |
Q |
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||||||||||||||||||| | |||||||||||| |||||||| ||| ||| | ||||| |||||||| |||| |||||| |
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| T |
44467495 |
tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag |
44467577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 46358821 - 46358952
Alignment:
| Q |
25 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa |
124 |
Q |
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||||||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| |||| |||| |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
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| Q |
125 |
agatgctttggaaggataataaggatctcatc |
156 |
Q |
| |
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|| || |||||||| |||| ||||| |||||| |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatc |
46358952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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