View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_11 (Length: 405)
Name: NF0896_low_11
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 29 - 395
Target Start/End: Original strand, 31535111 - 31535477
Alignment:
| Q |
29 |
agtactcatgaacctcacattcagaataagaaaagtgaaacaaaaaagaaatcaagctcattggtctcaattcgctactttgattccgatgatagcgatt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31535111 |
agtactcatgaacctcacattcagaataagaaaagtgaaacaaaaaagaaatcaagctcattggcctcaattcgctactttgattccgatgatagcgatt |
31535210 |
T |
|
| Q |
129 |
ctgaggatggacttcataaacggaattcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagtttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31535211 |
ctgaggatggacttcataaacggaattcagctagtgttgcccatcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagtttt |
31535310 |
T |
|
| Q |
229 |
aagttcaaaggatgcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagtgttcataataatgatctctga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31535311 |
aagttcaaaggatgcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagggttcataataatgatctctga |
31535410 |
T |
|
| Q |
329 |
aaattaggcaggacctagacctggatcagcagatattgaagcatttaagccaatttctgaacctatg |
395 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
31535411 |
aaattaggcaggacctagacctggatcagcaaatattgaatcatttaagccaatttctgaacctatg |
31535477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 34534467 - 34534210
Alignment:
| Q |
34 |
tcatgaacctcacattcagaataagaaaagtgaaacaaaaaagaaatcaagctcattggtctcaattcgctactttgattccgatgatagcgattctgag |
133 |
Q |
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||||||||||| |||| ||||| || ||||| |||||||||||||||| ||| | ||| |||| || ||||||||| |||||||| || |||||| |
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| T |
34534467 |
tcatgaacctcgcattaagaatgagctgagtgacgcaaaaaagaaatcaagttcacggacctcgattcccttctttgattctgatgatagtgaatctgag |
34534368 |
T |
|
| Q |
134 |
gatggacttcataaacggaattcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagtt |
233 |
Q |
| |
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| || | |||||||| || ||||||||||||||| |||||| || ||||| ||| || || || | ||||||| |||| | |||||||||||||| | |
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| T |
34534367 |
gctgtgcgtcataaacagagttcagctagtgttgcgcgtcctgttagtagagtatctcgaagaacatcagcttctccaaaaaccggtacagttttaagct |
34534268 |
T |
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| Q |
234 |
caaaggatgcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaa |
291 |
Q |
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| | | ||| ||| |||||| ||| |||||||| ||||||||||||||||||||| |
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|
| T |
34534267 |
ctgatcacgctccttcatctgaagctcctgtgactcctggttcaaggcttggatggaa |
34534210 |
T |
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